Author

Ayla De Paepe

Karolinska Institutet

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Organism:human· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Charlotte GustafssoniD· 1 shared Christian SchmidliD· 1 shared Geert TrooskensiD· 1 shared Katrien Vandepitte· 1 shared Klaas Mensaert· 1 shared Robert MånssoniD· 1 shared Sandra SteyaertiD· 1 shared Simon Denil· 1 shared

Activity by Year

2014-2019 · peak 1/yr

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10 top collaborators · 24 mutual co-author links

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1 shared paperMolecular Biology

Charlotte GustafssonORCID

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2 papers

Recent·Most cited

High-Throughput ChIPmentation: freely scalable, single day ChIPseq data generation from very low cell-numbers

Charlotte Gustafsson, Ayla De Paepe, Christian Schmidl, Robert Månsson

This paper introduces HT-ChIPmentation, a method that enables rapid ChIP-seq data generation from very low cell numbers by eliminating DNA purification and reducing reverse-crosslinking time.

BMC Genomics · Jan 18, 2019Peer-reviewedMolecular Biology

SNP-guided identification of monoallelic DNA-methylation events from enrichment-based sequencing data

Sandra Steyaert, Wim Van Criekinge, Ayla De Paepe, Simon Denil, Klaas Mensaert, Katrien Vandepitte, Wim Vanden Berghe, Geert Trooskens, Tim De Meyer

The paper identifies monoallelic DNA-methylation events using SNP-guided analysis of MethylCap-seq data, finding 80 genomic regions with 25 linked to imprinting.

bioRxiv · Feb 4, 2014Bioinformatics