Wim Van Criekinge

The paper tests for phylogenetic signal in patent applications across species using a knowledge graph linking taxonomy to patents, finding significant correlation between phylogenetic distance and patent profile similarity.

HIV-PULSE is a long-read sequencing assay that enables high-throughput, accurate characterization of HIV-1 proviral genomes without limiting dilution steps.

This paper uses variational autoencoders to predict DNA-methylation age and identifies biologically relevant features of ageing.

The paper develops MAGE, a tool for RNAseq-based genotyping and detection of allelic divergence in kidney tissues, identifying non-cis-eQTL ASE and aberrations in carcinoma.

neoMS predicts MHC-I epitope presentation using mass spectrometry data, achieving higher accuracy than existing methods and improving immunotherapy response prediction.

The paper investigates how differential DNA methylation in ACE2 and ACE1 promoters may explain variability in COVID-19 susceptibility and severity.

The paper identifies monoallelic DNA-methylation events using SNP-guided analysis of MethylCap-seq data, finding 80 genomic regions with 25 linked to imprinting.