Benjamin Gallean

MorphoDeep enables fast 3D cell instance segmentation by learning cell interfaces and junctions

MorphoDeep improves 3D cell segmentation by learning cell interfaces and junctions, achieving higher accuracy and speed than existing methods.

MorphoNet 2.0: An innovative approach for qualitative assessment and segmentation curation of large-scale 3D time-lapse imaging datasets

MorphoNet 2.0 improves segmentation accuracy and interpretability for 3D time-lapse imaging datasets through self-evaluation and correction tools.

Automated cell naming reveals reproducible and variable features of ascidian embryogenesis

This paper introduces an automated framework for naming cells in ascidian embryos, revealing consistent and variable features of embryogenesis across species and conditions.

A single oscillating proto-hypothalamic neuron gates taxis behavior in the primitive chordate Ciona

The paper identifies a single oscillating neuron in Ciona larvae that gates phototaxis behavior by modulating the phototaxis circuit through temporal inhibition.