Author

Brett K Beaulieu-Jones

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioinformatics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:electronic health records· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Casey S Greene· 2 shared

Activity by Year

2016-2016 · peak 2/yr

2 papers

Recent·Most cited

BioinformaticsbioRxivAug 11, 2016

Reproducible Computational Workflows with Continuous Analysis

Brett K Beaulieu-Jones, Casey S Greene

This paper introduces a method for reproducible computational workflows using Docker and continuous integration to automate analysis and ensure reproducibility.

DOI 10.1038/nbt.3780

experimental assaybenchmarking

𝕏 PostBluesky

BioinformaticsbioRxivJul 26, 2016

Semi-Supervised Learning of the Electronic Health Record for Phenotype Stratification

Brett K Beaulieu-Jones, Casey S Greene

This paper develops a semi-supervised learning method using denoising autoencoders to extract phenotypes from EHRs, improving classification and survival prediction in ALS data.

DOI 10.1016/j.jbi.2016.10.007

humanelectronic health records

𝕏 PostBluesky