Author

Bruce Martin

Chan Zuckerberg Initiative (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Ecology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Research Focus:ecology & biodiversity· 1 Assay:field survey / ecological data· 1 Research Focus:genome assembly· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Ambrose CarriD· 1 shared Andrew Myers· 1 shared Angela Oliveira PiscoiD· 1 shared Anurag A. AgrawaliD· 1 shared Arathi Mani· 1 shared Benedict PateniD· 1 shared Brandy McNulty· 1 shared Brian McCandless· 1 shared

Activity by Year

2021-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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1 shared paperSystems Biology

Ambrose CarrORCID

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Author profile →

3 papers

Recent·Most cited

A Global Assessment of Plant-Mite Mutualism and its Ecological Drivers

Andrew Myers, Bruce Martin, Jenna Yonenaga, Anurag A. Agrawal, Marjorie Gail Weber

The paper assesses plant-mite mutualism globally, showing mite domatia evolved in temperate regions and dry habitats, with climate-driven patterns of morphological convergence.

Proceedings of the National Academy of Sciences · Nov 19, 2024Peer-reviewedEcology

Phased nanopore assembly with Shasta and modular graph phasing with GFAse

Ryan Lorig-Roach, Melissa Meredith, Jean Monlong, Miten Jain, Hugh E. Olsen, Brandy McNulty, David Porubskỳ, Tessa G. Montague, Julian Lucas, Chris Condon, Jordan M. Eizenga, Sissel Juul, Sean K. McKenzie, Sara E. Simmonds, Jimin Park, , Benedict Paten

The paper introduces methods for haplotype-resolved de novo assembly using Shasta and GFAse, showing improved assembly quality with newer Oxford Nanopore reads.

Genome Research · Apr 16, 2024Peer-reviewedBioinformatics

cellxgene: a performant, scalable exploration platform for high dimensional sparse matrices

Colin Megill, Bruce Martin, Charlotte Weaver, Sidney M. Bell, Lia Prins, Seve Badajoz, Brian McCandless, Angela Oliveira Pisco, Marcus Kinsella, Fiona Griffin, Justin T. Kiggins, Genevieve Haliburton, Arathi Mani, Matthew Weiden, Madison I. Dunitz, , Ambrose Carr

cellxgene couples a Python server to a browser-based JavaScript client, letting researchers cross-filter, re-embed, annotate, and test differential expression in datasets of millions of cells.

bioRxiv · Apr 5, 2021 · PreprintSystems Biology✦ In-depth digest