Phased nanopore assembly with Shasta and modular graph phasing with GFAse
Ryan Lorig-Roach, Melissa Meredith, Jean Monlong, Miten Jain, Hugh E. Olsen, Brandy McNulty, David Porubskỳ, Tessa G. Montague, Julian Lucas, Chris Condon, Jordan M. Eizenga, Sissel Juul, Sean K. McKenzie, Sara E. Simmonds, Jimin Park, , Benedict Paten
The paper introduces methods for haplotype-resolved de novo assembly using Shasta and GFAse, showing improved assembly quality with newer Oxford Nanopore reads.
Genome Research · Apr 16, 2024Peer-reviewedBioinformatics