Author

Bryce van de Geijn

GenentechPrimary ORCID profile (0000-0003-3689-8951 · 10 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Bryce van de GeijniD10 papers · Harvard University

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:variant effect prediction· 2 Assay:ChIP-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Graham McVicker· 2 shared Yoav GiladiD· 2 shared Alex M. TsengiD· 1 shared Alexander KarollusiD· 1 shared Avantika LaliD· 1 shared David Garfield· 1 shared Gabriele ScaliaiD· 1 shared Gökçen EraslaniD· 1 shared

Activity by Year

2014-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersGenomics

Graham McVicker

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3 papers

Recent·Most cited

Decoding sequence determinants of gene expression in diverse cellular and disease states

Avantika Lal, Alexander Karollus, Laura M. Gunsalus, David Garfield, Surag Nair, Alex M. Tseng, M. Grace Gordon, John Blischak, Bryce Van De Geijn, Tushar Bhangale, Jenna L. Collier, Nathaniel Diamant, Tommaso Biancalani, Héctor Corrada Bravo, Gabriele Scalia, Gökçen Eraslan

The paper introduces Decima, a model that predicts cell type- and condition-specific gene expression from DNA sequence using single-cell RNA sequencing data.

Nature Methods · May 25, 2026Peer-reviewedGenomics

WASP: allele-specific software for robust discovery of molecular quantitative trait loci

Bryce van de Geijn, Graham McVicker, Yoav Gilad, Jonathan Pritchard

WASP improves the discovery of molecular QTLs by providing robust allele-specific read mapping and analysis, showing lower error rates and higher power than existing methods.

Nature Methods · Sep 14, 2015Peer-reviewedGenomics

Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels.

Nicholas E Banovich, Xun Lan, Graham McVicker, Bryce Van de Geijn, Jacob F Degner, John D. Blischak, Julien Roux, Jonathan K. Pritchard, Yoav Gilad

PLoS Genetics · Sep 18, 2014Peer-reviewedGenomics