Author

Jenna L. Collier

GenentechORCID 0000-0002-4071-4986Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:scRNA-seq· 3 Approach:deep learning· 2 Organism:human· 2 Organism:mouse· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Gabriele ScaliaiD· 2 shared Héctor Corrada BravoiD· 2 shared Tommaso BiancalaniiD· 2 shared Aïcha BenTaiebiD· 1 shared Alex Bastian· 1 shared Alex M. TsengiD· 1 shared Alexander KarollusiD· 1 shared Alma AnderssoniD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersGenomics

Gabriele ScaliaORCID

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3 papers

Recent·Most cited

Decoding sequence determinants of gene expression in diverse cellular and disease states

Avantika Lal, Alexander Karollus, Laura M. Gunsalus, David Garfield, Surag Nair, Alex M. Tseng, M. Grace Gordon, John Blischak, Bryce Van De Geijn, Tushar Bhangale, Jenna L. Collier, Nathaniel Diamant, Tommaso Biancalani, Héctor Corrada Bravo, Gabriele Scalia, Gökçen Eraslan

The paper introduces Decima, a model that predicts cell type- and condition-specific gene expression from DNA sequence using single-cell RNA sequencing data.

Nature Methods · May 25, 2026Peer-reviewedGenomics

Harnessing Inflammatory Monocytes to Overcome Resistance to Anti-PD-1 Immunotherapy

Matthew P. Zimmerman, Amy Y. Huang, Emily K. Cox, Rose Al Abosy, Wan Lin Chong, Alex Bastian, Katherine J. Vietor, Yacine A. Choutri, Jenna L. Collier, Vasyl Zhabotynsky, Haiyang Wang, Megan E. Fung, Sarah A. Weiss, Emily J. Robitschek, Jia‐Ren Lin, , Brian C. Miller

This study shows CD40 agonist therapy reduces tumor growth in antigen presentation-deficient tumors by reprogramming monocytes and requiring IFN-gamma and CD8+ T cells for efficacy.

bioRxiv · Feb 8, 2026 · PreprintImmunology

Inferring cellular communication through mapping cells in space using Tangram 2

Hejin Huang, Alma Andersson, Sunny Z. Wu, Gabriele Scalia, Jenna L. Collier, Kam Hon Hoi, Sören Müller, Graham Heimberg, Héctor Corrada Bravo, Shreya Gaddam, Jan-Christian Hütter, Shannon J. Turley, David Richmond, Aïcha BenTaieb, Tommaso Biancalani

Tangram2 maps cell-to-cell communication by integrating spatial transcriptomics with single-cell RNA sequencing to identify gene expression changes driven by neighboring cell types.

bioRxiv · Sep 28, 2025 · PreprintGenomics