Author

Carlos Garcia Giron

European Bioinformatics Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 4 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 5 Organism:human· 4 Approach:statistical model· 4 Research Focus:variant calling· 3 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Research Focus:genome assembly· 2 Research Focus:benchmarking· 1

Frequent Co-Authors

Fergal J. MartiniD· 5 shared Thibaut HourlieriD· 5 shared Alexandra P. LewisiD· 4 shared Andrea GuarracinoiD· 4 shared Ann M. Mc CartneyiD· 4 shared Arang RhieiD· 4 shared David PorubskỳiD· 4 shared Giulio FormentiiD· 4 shared

Activity by Year

2023-2024 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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5 shared papersGenomics

Fergal J. MartinORCID

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Author profile →

5 papers

Recent·Most cited

Continent-wide genomic analysis of the African buffalo (Syncerus caffer).

Andrea Talenti, Toby Wilkinson, Elizabeth A. J. Cook, Johanneke Dinie Hemmink, Edith A. Paxton, Matthew Mutinda Munyao, Stephen Ngulu, Siddharth Jayaraman, Richard P. Bishop, Isaiah Obara, Thibaut Hourlier, Carlos Garcia Giron, Fergal J. Martin, Michel Labuschagné, Patrick Atimnedi, , Liam J. Morrison

This study presents a continent-wide genomic analysis of African buffalo, revealing three main lineages and signatures of selection related to immune response.

Communications Biology · Jun 29, 2024Peer-reviewedGenomics

The complete sequence of a human Y chromosome

Arang Rhie, Sergey Nurk, Monika Čechová, Savannah J. Hoyt, Dylan J. Taylor, Nicolas Altemose, Paul W. Hook, Sergey Koren, Mikko Rautiainen, Ivan A. Alexandrov, Jamie Allen, Mobin Asri, Andrey V. Bzikadze, Nae-Chyun Chen, Chen-Shan Chin, , Adam M. Phillippy

The paper presents the complete sequence of a human Y chromosome, correcting errors in the GRCh38 reference and adding over 30 million base pairs.

Nature · Aug 23, 2023Peer-reviewedGenomics

Pangenome Graph Construction from Genome Alignment with Minigraph-Cactus

Glenn Hickey, Jean Monlong, Jana Ebler, Adam M. Novak, Jordan M. Eizenga, Yan Ping Gao, Haley Abel, Lucinda Fulton, Mobin Asri, Gunjan Baid, Carl A. Baker, Anastasiya Belyaeva, Konstantinos Billis, Guillaume Bourque, Silvia Buonaiuto, , Valérie Schneider

The paper introduces Minigraph-Cactus, a pangenome pipeline that constructs pangenome graphs directly from whole-genome alignments, demonstrating improved performance in mapping and variant calling across human and Drosophila data.

Nature Biotechnology · May 10, 2023Peer-reviewedBioinformatics

A Draft Human Pangenome Reference

Wen‐Wei Liao, Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Glenn Hickey, Shuangjia Lu, Julian Lucas, Jean Monlong, Haley Abel, Silvia Buonaiuto, Xian H. Chang, Haoyu Cheng, Justin Chu, Vincenza Colonna, , Francesca Floriana Tricomi

The paper presents a draft human pangenome reference that improves variant discovery and structural variant detection compared to existing references.

Nature · May 10, 2023Peer-reviewedGenomics

Recombination between heterologous human acrocentric chromosomes

Andrea Guarracino, Silvia Buonaiuto, Leonardo Gomes de Lima, Tamara Potapova, Arang Rhie, Sergey Koren, BORIS Y. RUBINSTEIN, Christian Fischer, Haley Abel, Lucinda L. Antonacci-Fulton, Mobin Asri, Gunjan Baid, Carl A. Baker, Anastasiya Belyaeva, Konstantinos Billis, , Ashley D. Sanders

The paper shows recombination between heterologous human acrocentric chromosomes using pangenome data, revealing pseudo-homologous regions linked to Robertsonian translocations.

Nature · May 10, 2023Peer-reviewedGenomics