KMAP: Kmer Manifold Approximation and Projection for visualizing DNA sequences
Chengbo Fu, Einari A. Niskanen, Gong‐Hong Wei, Zhirong Yang, Marta Sanvicente-García, Marc Güell, Lu Cheng
KMAP is a method for visualizing DNA sequences by projecting kmers into 2D space, showing it can detect patterns comparable to MEME and find biologically relevant interactions in ChIP-seq and gene editing data.
bioRxiv · Apr 12, 2024 · PreprintBioinformatics