Author

Marta Sanvicente-García

Universitat Pompeu FabraORCID 0000-0002-4508-2834Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:statistical model· 2 Assay:ChIP-seq· 1 Assay:CRISPR screen· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Marc GüelliD· 3 shared Avencia Sánchez-MejíasiD· 2 shared Albert García-ValienteiD· 1 shared Chengbo Fu· 1 shared Einari A. NiskaneniD· 1 shared Èric BautistaiD· 1 shared Gong‐Hong WeiiD· 1 shared Isabel Turpín· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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3 shared papersBioinformatics

Marc GüellORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintApr 12, 2024

KMAP: Kmer Manifold Approximation and Projection for visualizing DNA sequences

Chengbo Fu, Einari A. Niskanen, Gong‐Hong Wei…·Lu Cheng

KMAP is a method for visualizing DNA sequences by projecting kmers into 2D space, showing it can detect patterns comparable to MEME and find biologically relevant interactions in ChIP-seq and gene editing data.

DOI 10.1101/2024.04.12.589197

DNA methylationChIP-seq

𝕏 PostBluesky

BioinformaticsPLoS Computational BiologyPeer-reviewedMay 30, 2023

CRISPR-Analytics (CRISPR-A): a platform for precise analytics and simulations for gene editing

Marta Sanvicente-García, Albert García-Valiente, Socayna Jouide…·Marc Güell

CRISPR-Analytics provides a tool and pipeline for accurate gene editing analysis and simulation, improving precision in experimental design and results interpretation.

10 citations

CRISPR screenstatistical model

𝕏 PostBluesky

Synthetic BiologybioRxivPreprintDec 5, 2022

Synergic homology directed recombination by PRDM9 meiotic factor

Marta Sanvicente-García, Lourdes González-Bermúdez, Isabel Turpín…·Avencia Sánchez-Mejías

This study enhances homology-directed repair (HDR) efficiency by using PRDM9-Cas9 fusion with CtIP, validated through reporter systems for small and longer edits.

DOI 10.1101/2022.12.05.519167

experimental assay

𝕏 PostBluesky