Author

Colleen M. Farley

Jackson Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 1 Genetics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:mouse· 2 Assay:spatial transcriptomics· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1

Frequent Co-Authors

Abigail Brackett· 1 shared Alicia WarreniD· 1 shared Chih‐Hao ChangiD· 1 shared Courtney WilleyiD· 1 shared Damien ChaussabeliD· 1 shared Gretchen T. ClarkiD· 1 shared John J. WilsoniD· 1 shared Nadia A RosenthaliD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperGenetics

Abigail Brackett

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2 papers

Recent·Most cited

Circadian Dysregulation in Aging Alters Senescence and Inflammatory Pathways in a Sex- and Time-of-Day Dependent Manner

Gretchen T. Clark, Yue Zhao, Robyn E. Reeve, Colleen M. Farley, Courtney Willey, Susan Sheehan, Samantha Spellacy, Alicia Warren, Abigail Brackett, Nadia A Rosenthal, Ron Korstanje

This study shows that aging disrupts circadian rhythms, leading to sex- and time-of-day-dependent changes in senescence and inflammatory pathways in mice.

bioRxiv · Mar 8, 2026 · PreprintGenetics

Tackling the Complexity of Spatial Transcriptomics Data Interpretation with Large Language Models

Taushif Khan, Colleen M. Farley, John J. Wilson, Chih‐Hao Chang, Damien Chaussabel

This study uses large language models to analyze spatial transcriptomics data from a murine melanoma model, identifying immunosuppressive mechanisms in the tumor microenvironment.

bioRxiv · Nov 28, 2024 · PreprintCancer Biology