Author

Cynthia M Ramirez

University of California, Santa Cruz

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Developmental Biology· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Vanessa D. JönssoniD· 2 shared Andrew OlanderiD· 1 shared Christopher K. WongiD· 1 shared Lydia MokiD· 1 shared Nicholas R. RoseiD· 1 shared Paloma MedinaiD· 1 shared Sara Kaushik· 1 shared Shaheen S. SikandariD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 21 mutual co-author links

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2 shared papersImmunology

Vanessa D. JönssonORCID

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2 papers

Recent·Most cited

TRIOPS: A deep learning framework for prediction of T cell receptor-MHC binding specificity

Nicholas R. Rose, Cynthia M Ramirez, Lydia Mok, Christopher K. Wong, Vanessa D. Jönsson

TRIOPS predicts TCR-MHC restriction from amino acid sequences, achieving high AUC scores and generalizing to unseen alleles and HLA genotypes.

bioRxiv · Jul 4, 2026 · PreprintImmunology

Pregnancy Reduces Il33+ Hybrid Progenitor Accumulation in the Aged Mammary Gland

Andrew Olander, Cynthia M Ramirez, Veronica Haro Acosta, Paloma Medina, Sara Kaushik, Vanessa D. Jönsson, Shaheen S. Sikandar

This study shows pregnancy reduces Il33+ hybrid progenitor cells in aged mammary glands, improving lineage integrity and potentially lowering breast cancer risk.

bioRxiv · Aug 1, 2024 · PreprintDevelopmental Biology