Author

D. Biriukov

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 3

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:cell signaling & trafficking· 1 Approach:mechanistic / dynamical model· 1 Research Focus:protein folding & dynamics· 1 Assay:spatial transcriptomics· 1 Approach:statistical model· 1

Frequent Co-Authors

M. Javanainen· 2 shared A. Olzynska· 1 shared C. Tempra· 1 shared D. Tranter· 1 shared K. Vazdar· 1 shared L. Cwiklik· 1 shared M. Vazdar· 1 shared S. Karki· 1 shared

Activity by Year

2023-2023 · peak 3/yr

Co-Author Collaboration Network

9 top collaborators · 16 mutual co-author links

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2 shared papersBiophysics

M. Javanainen

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Author profile →

3 papers

Recent·Most cited

The Sec61/TRAP Translocon Scrambles Lipids

M. Javanainen, S. Karki, D. Tranter, D. Biriukov, V. O. Paavilainen

The paper investigates the lipid scrambling activity of Sec61 and TRAP using molecular dynamics simulations, showing they facilitate lipid flip-flop via a credit card mechanism and are selective for phosphatidylcholine.

bioRxiv · Nov 23, 2023 · PreprintBiophysics

Efficient Simulations of Membrane and Solvent Asymmetry With Flat-Bottom Restraints

D. Biriukov, M. Javanainen

This paper introduces a method to efficiently simulate asymmetric lipid membranes and solvent environments using flat-bottom restraints, achieving results comparable to a costly double-bilayer setup.

bioRxiv · May 26, 2023Biophysics

A Stealthy Player in Lipid Experiments? EDTA Binding to Phosphatidylcholine Membranes Probed by Simulations and Monolayer Experiments

K. Vazdar, C. Tempra, A. Olzynska, D. Biriukov, L. Cwiklik, M. Vazdar

This paper shows EDTA anions bind to phosphatidylcholine monolayers, altering surface pressure and highlighting potential interference in lipid experiments.

bioRxiv · Mar 12, 2023Biophysics