Author

Daniel Gaffney

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:fine-mapping· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Andrew Knights· 1 shared Christine Hale· 1 shared Fernando Martinez Estrada· 1 shared Fiona Powrie· 1 shared Gordon DouganiD· 1 shared Kaur AlasooiD· 1 shared Natsuhiko Kumasaka· 1 shared Siamon GordoniD· 1 shared

Activity by Year

2015-2015 · peak 2/yr

Co-Author Collaboration Network

9 top collaborators · 22 mutual co-author links

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1 shared paperBioinformatics

Andrew Knights

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2 papers

Recent·Most cited

Transcriptional profiling of macrophages derived from monocytes and iPS cells identifies a conserved response to LPS and novel alternative transcription

Kaur Alasoo, Fernando Martinez Estrada, Christine Hale, Siamon Gordon, Fiona Powrie, Gordon Dougan, Subhankar Mukhopadhyay, Daniel Gaffney

The paper compares transcriptomes of macrophages derived from monocytes and iPSCs to identify conserved and novel LPS responses.

bioRxiv · Jun 25, 2015Immunology

Fine-mapping cellular QTLs with RASQUAL and ATAC-seq

Natsuhiko Kumasaka, Andrew Knights, Daniel Gaffney

This paper introduces RASQUAL, a statistical method for QTL mapping in ATAC-seq data, identifying 2,706 caQTLs and improving causal variant localization for fine-mapping disease variants.

bioRxiv · Apr 30, 2015Bioinformatics