Author

Deelaka Wellappili

German Cancer Research Center

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Assay:scRNA-seq· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:contrastive learning· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Organism:human· 1 Research Focus:imputation· 1

Frequent Co-Authors

Daniele LucarelliiD· 2 shared Dieter SauriD· 2 shared Fabian Joachim TheisiD· 2 shared Philipp PutzeiD· 2 shared Barbara Seidler· 1 shared C. A. Shull· 1 shared Chiara FalcomatàiD· 1 shared Christian Schneeweis· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Daniele LucarelliORCID

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2 papers

Recent·Most cited

Cellpin enables reference-based imputation and denoising of spatial transcriptomes

Philipp Putze, Daniele Lucarelli, Deelaka Wellappili, Mojtaba Bahrami, Malte D. Luecken, Fabian Joachim Theis, Dieter Saur

Cellpin imputes and denoises spatial transcriptomes using a variational autoencoder trained on single-cell RNA-seq, outperforming existing methods without requiring cross-modality alignment.

bioRxiv · Jun 5, 2026 · PreprintBioinformatics

Cross-species single-cell atlases chart progression, therapy-driven remodelling and immune evasion in pancreatic cancer

Daniele Lucarelli, Shrey Parikh, Sara Jiménez, Christian Schneeweis, Devi Anggraini Ngandiri, Philipp Putze, Tina Šket, Deelaka Wellappili, Vanessa Gölling, Manzila Kuerbanjiang, C. A. Shull, Marie Roja Litwinski, Tania Bori Handschuh, Yasamin Dabiri, Magdalena Żukowska, , Dieter Saur

This paper generates cross-species single-cell atlases of pancreatic cancer to study progression, therapy response, and immune evasion across human and mouse models.

bioRxiv · Mar 23, 2026 · PreprintCancer Biology