Author

Di Zhu

Aarhus University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Genetics· 3 Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Assay:bulk RNA-seq· 3 Research Focus:eQTL / molecular QTL mapping· 3 Organism:bacteria (other)· 2 Research Focus:fine-mapping· 2 Assay:scRNA-seq· 2 Assay:whole-genome sequencing· 2 Research Focus:GWAS / association mapping· 1

Frequent Co-Authors

Bingxing AniD· 4 shared Houcheng LiiD· 4 shared Lingzhao FangiD· 4 shared Mian GongiD· 4 shared Weijie ZhengiD· 4 shared Bingjin LiniD· 3 shared Dailu GuaniD· 3 shared Jinyan TengiD· 3 shared

Activity by Year

2025-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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4 shared papersGenetics

Bingxing AnORCID

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5 papers

Recent·Most cited

Long-read RNA-seq resolves isoform-level and context-specific regulatory architecture of complex traits in cattle

Weijie Zheng, Q Zhang, Jinfeng He, Xiaoning Zhu, Mian Gong, Houcheng Li, Lin Liu, Li J, Zhu Ma, Bo Han, Yu Zhang, Jingsheng Lu, Bingjin Lin, Bingxing An, Zijiao Guo, , Sun D

The paper uses long-read RNA-seq to uncover isoform-level and context-specific regulatory effects in cattle, improving the resolution of molecular atlases and GWAS loci.

bioRxiv · Jun 5, 2026 · PreprintGenetics

The enhanced multi-tissue atlas of regulatory effects in cattle

Houcheng Li, Huicong Zhang, Di Zhu, Pengju Zhao, Zhenyu Wei, Jiaqi Lu, Mian Gong, Qi Zhang, Weijie Zheng, Xia Liu, Dailu Guan, Jinyan Teng, Qing Lin, Yongjie Tang, Yahui Gao, , Lingzhao Fang

The paper presents CattleGTEx, a resource characterizing regulatory effects in cattle, resolving GWAS signals and providing insights into adaptive evolution and selection.

bioRxiv · Mar 21, 2026 · PreprintGenetics

Sex-specific Genetic Regulatory Effects in Chickens

Haihan Zhang, Bingjin Lin, Yang Xi, Di Zhu, Chen Peng, Junhao Tu, Huichao Liu, Dailu Guan, Qingyuan Ouyang, Bogong Liu, Chenyu Fan, Zichao Song, Xing Meng, Houcheng Li, Bingxing An, , Xi He

The paper identifies sex-specific genetic regulatory effects in chickens using whole-genome sequencing and transcriptomes, revealing sex-dependent gene regulation and structural variants.

bioRxiv · Feb 28, 2026 · PreprintGenomics

An atlas of cell type specific regulatory effects in cattle

Houcheng Li, Huicong Zhang, Pengju Zhao, Qi Zhang, Senlin Zhu, Tao Shi, Yanan Wang, Jing-Sheng Lu, Yang Liu, John Francis O'Grady, David Evan MacHugh, Yu Wang, Zhenyu Wei, Xuemei Lv, Ming-Shan Wang, , Lingzhao Fang

The paper constructs a cattle cell-type-specific regulatory variant atlas by integrating bulk and single-cell RNA-seq data, identifying eQTL and linking them to GWAS loci for breeding insights.

bioRxiv · Jun 23, 2025 · PreprintGenetics

RAPID: Reliable and efficient Automatic generation of submission rePortIng checklists with large language moDels

Zeming Li, Xufei Luo, Zhenhua Yang, Huayu Zhang, Bingyi Wang, Long Ge, Zhaoxiang Bian, James Zou, Yaolong Chen, Lu Zhang, ADVANCED Working Group, Ye Wang, Haodong Li, Di Zhu, Yuanyuan Yao, , Shilin Tang

RAPID is an automated tool using large language models to generate medical reporting checklists, achieving high accuracy on CONSORT and CONSORT-AI datasets.

Journal of the American Medical Informatics Association · May 27, 2025Peer-reviewedBioinformatics