Author

Emre Demirsoy

Canada's Michael Smith Genome Sciences Centre

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:drug response / drug discovery· 2 Assay:proteomics· 2 Organism:chicken / avian· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Approach:graph neural network· 1 Approach:machine learning (classical)· 1 Assay:metagenomics· 1

Frequent Co-Authors

Anat YanaiiD· 2 shared Caren C. HelbingiD· 2 shared İnanç BiroliD· 2 shared René L. WarreniD· 2 shared Vanessa C. ThompsoniD· 2 shared Ali SalehiiD· 1 shared Anna H. Dema· 1 shared Berke UçariD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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2 shared papersBioinformatics

Anat YanaiORCID

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Author profile →

2 papers

Recent·Most cited

Pathogen-specific antimicrobial activity prediction with biological large language model-based methods

Berke Uçar, Emre Demirsoy, Ali Salehi, Darcy Sutherland, Anat Yanai, Lauren Coombe, Vanessa C. Thompson, René L. Warren, Caren C. Helbing, İnanç Birol

The paper introduces triAMPh, a framework for predicting pathogen-specific antimicrobial peptide activity using biological large language models, showing it matches or outperforms existing methods.

bioRxiv · May 26, 2026 · PreprintBioinformatics

Efficacy and safety evaluation of artificial intelligence-identified antimicrobial peptides for use against avian pathogenic Escherichia coli in the poultry industry

Emre Demirsoy, Teagan I Parkin, Shaeleen E Mihalynuk, Anna H. Dema, Lorissa M. Corrie, Marika E Heilker, Haley N. Kuecks-Winger, Anat Yanai, Uluc B Birol, Michael McIlwee, Kay de Wet, Mathijs Knipscheer, Victoria Bowes, Vanessa Tuytel, Liam Ritchie, , İnanç Birol

This study evaluates three AI-identified antimicrobial peptides for efficacy and safety against avian pathogenic Escherichia coli in poultry, showing improved survival and immune modulation without adverse effects.

bioRxiv · Sep 15, 2025 · PreprintMicrobiology