Author

F. J. Planes

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Biochemistry· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:gene regulatory network inference· 2 Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

D. Olaverri-Mendizabal· 1 shared F. Balzerani· 1 shared I. Apaolaza· 1 shared L. V. Valcarcel· 1 shared L. Valcarcel· 1 shared N. Barrena· 1 shared S. Hassoun· 1 shared S. Perez· 1 shared

Activity by Year

2023-2023 · peak 2/yr

Co-Author Collaboration Network

9 top collaborators · 16 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperCancer Biology

D. Olaverri-Mendizabal

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Extending PROXIMAL to predict degradation pathways of phenolic compounds in the human gut microbiota

F. Balzerani, T. Blasco, S. Perez, L. V. Valcarcel, F. J. Planes, S. Hassoun

The paper introduces PROXIMAL2, an improved algorithm for predicting degradation pathways of phenolic compounds in the human gut microbiota, showing higher accuracy than PROXIMAL and RetroPath RL.

bioRxiv · May 17, 2023 · PreprintBiochemistry

Synthetic lethality in large-scale integrated metabolic and regulatory network models of human cells

N. Barrena, L. Valcarcel, D. Olaverri-Mendizabal, I. Apaolaza, F. J. Planes

The paper extends genetic Minimal Cut Sets (gMCS) to integrate metabolic and regulatory networks, identifying synthetic lethal gene pairs in human cancer cell lines.

bioRxiv · Jan 27, 2023Cancer Biology