Author

Frederick Jansen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:clustering· 2 Research Focus:dimensionality reduction· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Approach:machine learning (classical)· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Irzam SarfraziD· 2 shared Joshua David CampbelliD· 2 shared Masanao YajimaiD· 2 shared Rui HongiD· 2 shared Salam Al AbdullatifiD· 2 shared Vidya Prasad Akavoor· 2 shared William Evan JohnsoniD· 2 shared Xinyun CaoiD· 2 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Irzam SarfrazORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Interactive analysis of single-cell data using flexible workflows with SCTK2.0

Yichen Wang, Irzam Sarfraz, Nida Pervaiz, Rui Hong, Yusuke Koga, Vidya Prasad Akavoor, Xinyun Cao, Salam Al Abdullatif, Syed Ali Zaib, Zhe Wang, Frederick Jansen, Masanao Yajima, William Evan Johnson, Joshua David Campbell

SCTK2.0 provides an integrated toolkit for scRNA-seq analysis with a graphical interface, enabling non-programmers to perform end-to-end workflows and generate reproducible reports.

Patterns · Aug 1, 2023Peer-reviewedBioinformatics

Comprehensive generation, visualization, and reporting of quality control metrics for single-cell RNA sequencing data

Rui Hong, Yusuke Koga, Shruthi Bandyadka, Anastasia Leshchyk, Yichen Wang, Vidya Prasad Akavoor, Xinyun Cao, Irzam Sarfraz, Zhe Wang, Salam Al Abdullatif, Frederick Jansen, Masanao Yajima, William Evan Johnson, Joshua David Campbell

The paper introduces a pipeline for generating, visualizing, and reporting quality control metrics for scRNA-seq data, improving standardization across platforms.

Nature Communications · Mar 30, 2022Peer-reviewedBioinformatics