Author

G. Hamarneh

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Cell Biology· 7

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 6 Approach:deep learning· 5 Organism:human· 5 Research Focus:cell signaling & trafficking· 3 Research Focus:clustering· 3 Assay:imaging· 3 Research Focus:cell-cell communication· 2 Research Focus:differential expression· 2

Frequent Co-Authors

I. R. Nabi· 7 shared B. Cardoen· 5 shared G. GAO· 4 shared I. M. Khater· 3 shared A. W. Vogl· 2 shared B. Joshi· 2 shared C. Hallgrimson· 2 shared K. R. Vandevoorde· 2 shared

Activity by Year

2019-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

7 shared papersCell Biology

I. R. Nabi

Mutual co-authors in cluster

Author profile →

7 papers

Recent·Most cited

SuperResNET GUI: model-free single molecule network analysis software achieves molecular resolution of Nup96

Y. L. Li, I. M. Khater, C. Hallgrimson, B. Cardoen, T. H. Wong, G. Hamarneh, I. R. Nabi

SuperResNET GUI analyzes single molecule data to reconstruct subcellular structures at molecular resolution without prior models.

bioRxiv · Mar 12, 2024Cell Biology

Super-resolution single molecule network analysis (SuperResNET) detects changes to clathrin structure by small molecule inhibitors

T. H. Wong, I. M. Khater, C. Hallgrimson, Y. L. Li, G. Hamarneh, I. R. Nabi

SuperResNET analyzes single-molecule imaging data to show that Pitstop 2 and Dynasore alter clathrin structure in distinct ways in HeLa cells.

bioRxiv · Mar 7, 2024 · PreprintCell Biology

nERdy: network analysis of endoplasmic reticulum dynamics

A. Samudre, G. GAO, B. Cardoen, B. Joshi, I. R. Nabi, G. Hamarneh

nERdy and nERdy+ accurately extract and represent ER network dynamics, revealing roles of Atlastin and Reticulon 4 in tubular matrix formation.

bioRxiv · Feb 20, 2024 · PreprintCell Biology

Membrane contact site detection (MCS-DETECT) reveals dual control of rough mitochondria-ER contacts

B. Cardoen, K. R. Vandevoorde, G. GAO, P. Alan, W. Liu, E. Tiliakou, A. W. Vogl, G. Hamarneh, I. R. Nabi

MCS-DETECT identifies a dual regulatory mechanism for riboMERCs, dependent on RRBP1 and modulated by Gp78 ubiquitin ligase activity.

bioRxiv · Jun 23, 2022Cell Biology

Basal Gp78-dependent mitophagy promotes mitochondrial health and limits mitochondrial ROS production

P. Alan, K. R. Vandevoorde, B. Joshi, B. Cardoen, G. Gao, Y. Mohammadzadeh, G. Hamarneh, I. R. Nabi

This study shows that basal Gp78-dependent mitophagy maintains mitochondrial health by removing low-potential mitochondria, thereby reducing ROS production.

bioRxiv · Sep 17, 2021Cell Biology

SUPER RESOLUTION MICROSCOPY AND DEEP LEARNING IDENTIFY ZIKA VIRUS REORGANIZATION OF THE ENDOPLASMIC RETICULUM

R. K. M. Long, K. P. Moriarty, B. Cardoen, G. Gao, A. W. Vogl, F. Jean, G. Hamarneh, I. R. Nabi

This study uses super resolution microscopy and deep learning to identify ZIKV-induced ER reorganization and its role in viral replication.

bioRxiv · May 12, 2020Cell Biology

Super-resolution modularity analysis shows polyhedral caveolin-1 oligomers combine to form scaffolds and caveolae

I. M. Khater, Q. Liu, K. C. Chou, G. Hamarneh, I. R. Nabi

The paper uses super-resolution microscopy and network modularity analysis to show that caveolin-1 oligomers form modular scaffolds and caveolae through polyhedral interactions.

bioRxiv · May 28, 2019Cell Biology