Author

G. Qi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 2 Biochemistry· 1 Immunology· 1 Pharmacology & Toxicology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Approach:deep learning· 3 Approach:experimental assay· 3 Assay:protein structure· 3 Assay:proteomics· 3 Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2

Frequent Co-Authors

M. J. Schnieders· 2 shared M. R. Tollefson· 2 shared A. B. Wijeratne· 1 shared A. L. Mosley· 1 shared A. Zhang· 1 shared B. R. Cooper· 1 shared C. E. O'Connell· 1 shared D. Ding· 1 shared

Activity by Year

2019-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 7 mutual co-author links

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2 shared papersBiophysics

M. J. Schnieders

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Study of Pinelliae Rhizoma hepatotoxicity based on complex network algorithm improvement

A. Zhang, Z. Li, G. Qi, Z. Xu, X. Liu, J. Ma, Z. Li

The paper improves a centrality algorithm by incorporating protein properties and validates it using yeast networks to study the hepatotoxicity of Pinelliae Rhizoma.

bioRxiv · Nov 29, 2022 · PreprintPharmacology & Toxicology

Protein Structure Prediction Using a Maximum Likelihood Formulation of a Recurrent Geometric Network

G. Qi, M. R. Tollefson, R. A. Gogal, R. J. H. Smith, M. AlQuraishi, M. J. Schnieders

This paper improves a protein structure prediction model by incorporating experimental uncertainty data and a maximum likelihood loss function, resulting in more accurate predictions and better convergence.

bioRxiv · Sep 3, 2021 · PreprintBiophysics

Quantitative proteomic and metabolomic profiling reveals altered mitochondrial metabolism and folate biosynthesis pathways in the aging Drosophila eye

H. Hall, B. R. Cooper, G. Qi, A. B. Wijeratne, A. L. Mosley, V. M. Weake

This study identifies age-related changes in mitochondrial metabolism and folate biosynthesis in Drosophila eyes using proteomic and metabolomic profiling, linking these changes to immune activation and potential neuroprotective strategies.

bioRxiv · Jun 2, 2021Biochemistry

Two interacting transcriptional coactivators cooperatively control plant immune responses

H. CHEN, M. Li, G. Qi, M. Zhao, L. Liu, J. Zhang, G. Chen, D. Wang, F. Liu, Z. Fu

This study identifies NPR1 and EDS1 as interacting coactivators that synergistically activate PR genes and plant defenses through Mediator complex recruitment and mutual stabilization.

bioRxiv · Mar 21, 2021Plant Biology

Acute noise causes down-regulation of ECM protein expression in guinea pig cochlea

M. Shi, L. Shi, D. Ding, Y. Hu, G. Qi, L. Zhan, Y. Zhu, P. Lv, N. Yu

This study uses proteomics to identify down-regulated ECM proteins in guinea pig cochleae after noise exposure, linking them to hearing loss mechanisms.

bioRxiv · Sep 27, 2020Immunology

Structural Insights into Hearing Loss Genetics from Polarizable Protein Repacking

M. R. Tollefson, J. Litman, G. Qi, R. J. Marini, C. E. O'Connell, M. J. Wipfler, H. V. Bernabe, W. T. Tollefson, T. L. Casavant, T. A. Braun, R. J. Smith, M. J. Schnieders

This study improves the structural resolution of deafness-associated proteins using polarizable force fields and shows how these data can enhance pathogenicity prediction.

bioRxiv · Feb 21, 2019Biophysics