Author

Gregory R Grant

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:statistical model· 1

Frequent Co-Authors

John B Hogenesch· 2 shared Katharina Hayer· 2 shared Angel Pizarro· 1 shared Angel Pizzaro· 1 shared Hannah Dueck· 1 shared Ibrahim Halil Kavakli· 1 shared Junhyong Kim· 1 shared Michael B Black· 1 shared

Activity by Year

2014-2015 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersBioinformatics

John B Hogenesch

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2 papers

Recent·Most cited

Benchmark Analysis of Algorithms for Determining and Quantifying Full-length mRNA Splice Forms from RNA-Seq Data

Katharina Hayer, Angel Pizzaro, Nicholas L Lahens, John B Hogenesch, Gregory R Grant

This study benchmarks algorithms for determining full-length mRNA splice forms from RNA-Seq data, finding most methods inaccurate even with idealized data and failing under real-world conditions.

Bioinformatics · Sep 3, 2015Peer-reviewedBioinformatics

IVT-seq reveals extreme bias in RNA-sequencing

Nicholas F Lahens, Ibrahim Halil Kavakli, Ray Zhang, Katharina Hayer, Michael B Black, Hannah Dueck, Angel Pizarro, Junhyong Kim, Rafael A Irizarry, Russell S Thomas, Gregory R Grant, John B Hogenesch

IVT-seq identifies significant technical biases in RNA-seq library preparation and sequencing, revealing coverage inconsistencies and rRNA depletion as major contributors.

Genome Biology · Jun 30, 2014Peer-reviewedGenomics