Simultaneous Profiling of Host Expression and Microbial Abundance by Spatial Meta-Transcriptome Sequencing
Lin Lyu, Xue Li, Ru Feng, Xin Zhou, Tuhin Kumar Guha, Xiaofei Yu, Guo Qiang Chen, Yufeng Yao, Bing Su, Duowu Zou, Michael P. Snyder, Lei Chen
The paper develops a pipeline to profile both host expression and microbial abundance from spatial transcriptomic data, demonstrating host-microbe interactions and method efficiency.
Genome Research · Mar 1, 2023Peer-reviewedGenomics