PUPpy: a primer design pipeline for substrain-level microbial detection and absolute quantification.
H. Ghezzi, M. Y. Fan, K. M. Ng, J. C. Burckhardt, D. M. Pepin, X. Lin, R. M. Ziels, C. Tropini
PUPpy designs taxon-specific primers for substrain-level microbial detection and absolute quantification, outperforming 16S rRNA and shotgun sequencing in defined communities.
bioRxiv · Dec 18, 2023Microbiology