Author

R. M. Ziels

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4

Signature Assays, Organisms & Methods

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Assay:metagenomics· 3 Research Focus:cell type annotation· 2 Research Focus:cell-cell communication· 2 Research Focus:clustering· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Approach:deep learning· 1

Frequent Co-Authors

P. Sampara· 2 shared A. Clum· 1 shared A. Tomatsu· 1 shared C. Tropini· 1 shared D. M. Pepin· 1 shared D. Vyshenska· 1 shared D. Z. Sousa· 1 shared E. A. Eloe-Fadrosh· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersMicrobiology

P. Sampara

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Author profile →

4 papers

Recent·Most cited

PUPpy: a primer design pipeline for substrain-level microbial detection and absolute quantification.

H. Ghezzi, M. Y. Fan, K. M. Ng, J. C. Burckhardt, D. M. Pepin, X. Lin, R. M. Ziels, C. Tropini

PUPpy designs taxon-specific primers for substrain-level microbial detection and absolute quantification, outperforming 16S rRNA and shotgun sequencing in defined communities.

bioRxiv · Dec 18, 2023Microbiology

A standardized quantitative analysis strategy for stable isotope probing metagenomics

D. Vyshenska, P. Sampara, K. Singh, A. Tomatsu, W. B. Kauffman, E. Nuccio, S. J. Blazewicz, J. Pett-Ridge, N. Varghese, M. Kellom, A. Clum, R. Riley, S. Roux, E. A. Eloe-Fadrosh, R. M. Ziels, R. R. Malmstrom

This paper introduces a standardized analysis framework and R package for quantifying isotopic enrichment in SIP metagenomics to identify active microbial genomes.

bioRxiv · Dec 20, 2022Microbiology

Activity-based cell sorting reveals resistance of functionally degenerate Nitrospira during a press disturbance in nitrifying activated sludge

M. Madill, Y. Luo, P. Sampara, R. M. Ziels

The paper uses BONCAT-FACS to analyze translational activity of Nitrospira populations in activated sludge during a press disturbance, revealing functional degeneracy and resistance among different ASVs.

bioRxiv · Apr 24, 2021Microbiology

Elucidating syntrophic butyrate-degrading populations in anaerobic digesters using stable isotope-informed genome-resolved metagenomics

R. M. Ziels, M. K. Nobu, D. Z. Sousa

This study identifies two novel microbial genomes involved in syntrophic butyrate degradation in anaerobic digesters using stable isotope-informed genome-resolved metagenomics.

bioRxiv · Feb 28, 2019Microbiology