Author

D. M. Pepin

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:differential expression· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

C. Tropini· 2 shared J. C. Burckhardt· 2 shared K. M. Ng· 2 shared B. Nguyen· 1 shared C. A. Clayton· 1 shared H. Ghezzi· 1 shared J. Nguyen· 1 shared K. Naqvi· 1 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersMicrobiology

C. Tropini

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

PUPpy: a primer design pipeline for substrain-level microbial detection and absolute quantification.

H. Ghezzi, M. Y. Fan, K. M. Ng, J. C. Burckhardt, D. M. Pepin, X. Lin, R. M. Ziels, C. Tropini

PUPpy designs taxon-specific primers for substrain-level microbial detection and absolute quantification, outperforming 16S rRNA and shotgun sequencing in defined communities.

bioRxiv · Dec 18, 2023Microbiology

Single-strain behavior predicts responses to environmental pH and osmolality in the gut microbiota.

K. M. Ng, S. Pannu, S. Liu, J. C. Burckhardt, T. Hughes, W. Van Treuren, J. Nguyen, K. Naqvi, B. Nguyen, C. A. Clayton, D. M. Pepin, S. R. Collins, C. Tropini

This study predicts microbiota responses to environmental pH and osmolality by analyzing bacterial growth under controlled conditions and identifying predictive genes and pathways.

bioRxiv · Aug 31, 2022Microbiology