Author

Huang Meng-fan

University of Washington

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Chia‐Lin WeiiD· 2 shared Adriana Estela Sedeño-CortésiD· 1 shared Amy S. LeonardsoniD· 1 shared Andrew B. StergachisiD· 1 shared Anna MinkinaiD· 1 shared Benjamin Cohen Stillman· 1 shared C. Shing Huang· 1 shared Caitlin N. JacquesiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersGenomics

Chia‐Lin WeiORCID

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Author profile →

2 papers

Recent·Most cited

Donor-specific assemblies enhance somatic structural variant detection in complex genomic regions

Taralynn Mack, Jiadong Lin, Luyao Ren, Min-Hwan Sohn, Anna Minkina, Youngjun Kwon, DongAhn Yoo, Yang Sui, Katherine M. Munson, Kendra Hoekzema, Francesco Kumara Mastrorosa, Melanie Sorensen, Marcelo Ayllon, Kaitlyn A. Sun, Nidhi Koundiya, , Evan E. Eichler

This study benchmarks donor-specific assemblies for improved detection of somatic structural variants in a melanoma cell line, finding they identify more variants, especially in repeat-rich regions.

bioRxiv · Feb 20, 2026 · PreprintGenomics

An Atlas of Extrachromosomal DNA Structures Illuminates Its Evolution and Biogenesis in Cancer

Chee‐Hong Wong, Kuo‐Chen Wei, Kuan-Yu Kung, Li-Hao Yang, Yin-Cheng Huang, C. Shing Huang, I-Jiuan Chung, Huang Meng-fan, Pei‐Hua Peng, Meihong Li, Chew Yee Ngan, Kou-Juey Wu, Chia‐Lin Wei

The paper maps ecDNA structures in glioblastoma using long-read sequencing and ecLego3, revealing structural variation, evolutionary dynamics, and transcriptional links to tumor adaptation.

bioRxiv · Dec 25, 2025 · PreprintCancer Biology