Author

Kevin An

University of California, Berkeley

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Assay:CRISPR screen· 1 Organism:mouse· 1 Research Focus:phylogenetics / evolution· 1 Assay:scATAC-seq· 1

Frequent Co-Authors

A. Sina BooeshaghiiD· 1 shared Aaron StreetsiD· 1 shared Haiyan Huang· 1 shared Ivan Kristanto· 1 shared Jase GehringiD· 1 shared Juliana J. LeeiD· 1 shared Matthew G. JonesiD· 1 shared Nir YosefiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

A. Sina BooeshaghiORCID

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2 papers

Recent·Most cited

Denoising single-cell ATAC-seq data with Shannon entropy

Shiyi Yang, Kevin An, Juliana J. Lee, Jase Gehring, A. Sina Booeshaghi, Haiyan Huang, Aaron Streets

This paper introduces a Shannon entropy-based method to filter high-quality nuclei in scATAC-seq data, improving signal-to-noise ratio and downstream analysis reliability.

bioRxiv · Oct 23, 2026 · PreprintBioinformatics

Tree reconstruction guarantees from CRISPR-Cas9 lineage tracing data using Neighbor-Joining

Sebastian Prillo, Kevin An, Wilson Wu, Ivan Kristanto, Matthew G. Jones, Yun S. Song, Nir Yosef

This paper develops a Neighbor-Joining algorithm with theoretical guarantees for reconstructing phylogenies from CRISPR-Cas9 lineage tracing data, showing improved performance on simulated and real data.

bioRxiv · Aug 27, 2024 · PreprintBioinformatics