Author

J. A. DeCaprio

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Cancer Biology· 2

Signature Assays, Organisms & Methods

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Organism:human· 5 Approach:statistical model· 5 Assay:bulk RNA-seq· 4 Research Focus:cell type annotation· 3 Research Focus:differential expression· 3 Approach:biophysical modeling· 1 Approach:comparative / phylogenetic analysis· 1 Approach:deep learning· 1

Frequent Co-Authors

J. Nomburg· 4 shared M. Meyerson· 3 shared G. J. Starrett· 2 shared A. Giobbie-Hurder· 1 shared A. Goldstein· 1 shared A. Mwanga· 1 shared A. Piris· 1 shared A. R. Thorner· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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4 shared papersMicrobiology

J. Nomburg

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Integrative analysis reveals therapeutic potential of pyrvinium pamoate in Merkel cell carcinoma

J. Yang, J. T. Lim, P. V. Santiago Raj, M. G. Corona, C. Chen, H. Khawaja, Q. Pan, G. D. Paine-Murrieta, R. G. Schnellmann, D. J. Roe, P. C. Gokhale, J. A. DeCaprio, M. Padi

This study identifies pyrvinium pamoate as a potential therapy for Merkel cell carcinoma by targeting Wnt signaling and multiple cancer vulnerabilities.

bioRxiv · Nov 1, 2023Cancer Biology

The Transcriptome Architecture of Polyomaviruses

J. Nomburg, W. Zou, T. C. Frost, C. Datta, S. Vasudevan, G. J. Starrett, M. J. Imperiale, M. Meyerson, J. A. DeCaprio

The paper characterizes the transcriptome architecture of polyomaviruses using RNA sequencing data, revealing pervasive wraparound transcription and novel conserved transcripts.

bioRxiv · Nov 12, 2021 · PreprintMicrobiology

An international report on bacterial communities in esophageal squamous cell carcinoma

J. Nomburg, S. Bullman, D. Nasrollahzadeh, E. A. Collisson, B. Abedi-Ardekani, L. O. Akoko, J. R. Atkins, G. C. Buckle, S. Gopal, N. Hu, B. Kaimila, M. Khoshnia, R. Malekzadeh, D. Menya, B. T. Mmbaga, , K. Van Loon

This study identifies bacterial communities associated with esophageal squamous cell carcinoma (ESCC) tumors and finds similar enrichment of oral bacteria in both saliva and tumor microbiomes of ESCC patients.

bioRxiv · Sep 29, 2021Microbiology

Pervasive generation of non-canonical subgenomic RNAs by SARS-CoV-2

J. Nomburg, M. Meyerson, J. A. DeCaprio

This study identifies canonical and non-canonical subgenomic RNAs in SARS-CoV-2, showing their consistent generation across isolates and infection conditions.

bioRxiv · Apr 28, 2020Microbiology

Clinical and molecular characterization of virus-positive and virus-negative Merkel cell carcinoma

G. J. Starrett, M. Thakuria, T. Chen, C. Marcelus, J. Cheng, J. Nomburg, A. R. Thorner, M. K. Slevin, W. Powers, R. T. Burns, C. Perry, A. Piris, F. C. Kuo, G. Rabinowits, A. Giobbie-Hurder, , J. A. DeCaprio

This study characterizes virus-positive and virus-negative Merkel cell carcinomas using deep sequencing, identifying molecular differences and clinical associations with immunosuppression and survival.

bioRxiv · Mar 24, 2019Cancer Biology