Optimal transport for mapping senescent cells in spatial transcriptomics
N. D. Nguyen, L. Rosas, T. Khaliullin, P. Jiang, E. Hasanaj, J. A. Ovando, M. Bueno, M. Konigshoff, O. Eickelberg, M. Rojas, A. L. Mora, J. Lugo-Martinez, Z. Bar-Joseph
The paper develops scDOT, a method combining spatial transcriptomics and single-cell RNA-seq with optimal transport to improve spatial mapping of senescent cells and identify novel genes involved in cell-cell interactions.
bioRxiv · Aug 16, 2023Cell Biology