Author

J. Lugo-Martinez

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell-cell communication· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Organism:human· 1 Assay:metagenomics· 1 Approach:optimal transport· 1 Assay:scRNA-seq· 1 Research Focus:spatial domain detection· 1

Frequent Co-Authors

Z. Bar-Joseph· 2 shared A. L. Mora· 1 shared D. Ruiz-Perez· 1 shared E. Hasanaj· 1 shared G. Narasimhan· 1 shared J. A. Ovando· 1 shared L. Rosas· 1 shared M. Bueno· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersCell Biology

Z. Bar-Joseph

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Author profile →

2 papers

Recent·Most cited

Optimal transport for mapping senescent cells in spatial transcriptomics

N. D. Nguyen, L. Rosas, T. Khaliullin, P. Jiang, E. Hasanaj, J. A. Ovando, M. Bueno, M. Konigshoff, O. Eickelberg, M. Rojas, A. L. Mora, J. Lugo-Martinez, Z. Bar-Joseph

The paper develops scDOT, a method combining spatial transcriptomics and single-cell RNA-seq with optimal transport to improve spatial mapping of senescent cells and identify novel genes involved in cell-cell interactions.

bioRxiv · Aug 16, 2023Cell Biology

Dynamic interaction network inference from longitudinal microbiome data

J. Lugo-Martinez, D. Ruiz-Perez, G. Narasimhan, Z. Bar-Joseph

The paper introduces a computational pipeline to reconstruct dynamic interaction models from longitudinal microbiome data, showing improved predictive performance and novel biological insights.

bioRxiv · Oct 1, 2018Microbiology