Author

Z. Bar-Joseph

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 2 Plant Biology· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:cell type annotation· 3 Organism:Arabidopsis· 2 Assay:bulk RNA-seq· 2 Research Focus:cell-cell communication· 2 Assay:DNA methylation· 2 Research Focus:gene regulatory network inference· 2 Assay:metagenomics· 2

Frequent Co-Authors

E. Hann· 2 shared J. Lugo-Martinez· 2 shared J. P. Saldierna Guzman· 2 shared J. R. Ecker· 2 shared J. Walley· 2 shared L. Yin· 2 shared M. G. Lewsey· 2 shared M. Zander· 2 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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2 shared papersPlant Biology

E. Hann

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Optimal transport for mapping senescent cells in spatial transcriptomics

N. D. Nguyen, L. Rosas, T. Khaliullin, P. Jiang, E. Hasanaj, J. A. Ovando, M. Bueno, M. Konigshoff, O. Eickelberg, M. Rojas, A. L. Mora, J. Lugo-Martinez, Z. Bar-Joseph

The paper develops scDOT, a method combining spatial transcriptomics and single-cell RNA-seq with optimal transport to improve spatial mapping of senescent cells and identify novel genes involved in cell-cell interactions.

bioRxiv · Aug 16, 2023Cell Biology

Transcription Factor Dynamics in Cross-Regulation of Plant Hormone Signaling Pathways

L. Yin, M. Zander, S.-s. C. Huang, M. Xie, L. Song, J. P. Saldierna Guzman, E. Hann, B. K. Shanbhag, S. Ng, S. Jain, B. J. Janssen, N. M. Clark, J. Walley, T. Beddoe, Z. Bar-Joseph, , J. R. Ecker

The paper constructs a cross-regulation network of plant hormone signaling pathways by analyzing transcription factor activity and dynamic regulatory models in Arabidopsis seedlings.

bioRxiv · Mar 7, 2023 · PreprintPlant Biology

Control of cytokinesis by β-adrenergic receptors indicates an approach for regulating cardiomyocyte endowment

H. Liu, C.-H. Zhang, N. Ammanamanchi, S. Suresh, C. Lewarchik, K. Rao, G. M. Uys, L. Han, M. Abrial, D. Yimlamai, B. Ganapathy, C. Guillermier, N. Chen, M. Khaladkar, J. Spaethling, , B. Kuhn

This study shows that β-adrenergic receptor signaling regulates cardiomyocyte cytokinesis, and β-blockers like propranolol can enhance division in ToF/PS cardiomyocytes, potentially improving heart function in CHD patients.

bioRxiv · Oct 4, 2019Cell Biology

Integrated Multi-omic Framework of the Plant Response to Jasmonic Acid

M. Zander, M. G. Lewsey, N. M. Clarke, L. Yin, A. Bartlett, J. P. Saldierna Guzman, E. Hann, A. Langford, B. Jow, A. Wise, J. R. Nery, H. Chen, Z. Bar-Joseph, J. Walley, R. Solano, J. R. Ecker

The paper develops an integrated multi-omic framework to study the plant response to jasmonic acid, identifying new regulatory components and crosstalk points with other signaling pathways.

bioRxiv · Aug 19, 2019Plant Biology

Dynamic interaction network inference from longitudinal microbiome data

J. Lugo-Martinez, D. Ruiz-Perez, G. Narasimhan, Z. Bar-Joseph

The paper introduces a computational pipeline to reconstruct dynamic interaction models from longitudinal microbiome data, showing improved predictive performance and novel biological insights.

bioRxiv · Oct 1, 2018Microbiology