Author

J. B. Holm

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Biophysics· 2 Ecology· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 5 Research Focus:cell type annotation· 3 Assay:metagenomics· 3 Assay:imaging· 2 Organism:non-human primate· 2 Approach:statistical model· 2 Organism:chicken / avian· 1 Research Focus:clustering· 1

Frequent Co-Authors

D. Wangpraseurt· 3 shared C. Ferrier-Pages· 2 shared C. K. Robinson· 2 shared J. Ravel· 2 shared K. Kristiansen· 2 shared M. Kühl· 2 shared N. Lyndby· 2 shared R. M. Brotman· 2 shared

Activity by Year

2018-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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3 shared papersBiophysics

D. Wangpraseurt

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Author profile →

7 papers

Recent·Most cited

Altitude-dependent agro-ecologies impact the microbiome diversity of scavenging indigenous chicken in Ethiopia

L. Glendinning, X. Jia, A. Kebede, S. O. Oyola, J.-E. Park, W. Park, A. Assiri, J. B. Holm, K. Kristiansen, J. Han, O. Hanotte

The study examines how altitude-dependent agro-ecologies affect the microbiome diversity of scavenging indigenous chickens in Ethiopia, identifying environmental factors influencing microbial composition.

bioRxiv · Jun 12, 2023Microbiology

Comparative metagenome-assembled genome analysis of Lachnovaginosum genomospecies, formerly known as BVAB1

J. B. Holm, M. France, B. B. Ma, C. K. Robinson, E. McComb, R. M. Brotman, J. Ravel

The paper presents seven metagenome-assembled genomes of BVAB1, revealing its potential metabolic functions and suggesting a new name for the species.

Frontiers in Cellular and Infection Microbiology · Mar 31, 2020Peer-reviewedMicrobiology

Lysates of Methylococcus capsulatus Bath induce a lean-like microbiota, intestinal FoxP3+RORγt+IL-17+ Tregs and improve metabolism

B. A. H. Jensen, J. B. Holm, I. S. Larsen, N. v. Burg, S. Derer, A. Rivollier, A. L. Agrinier, K. Sulek, S. A. Indrelid, Y. J. Arnoldussen, S. B. Sonne, E. Fjaere, M. T. F. Damgaard, S. I. Paerregaard, I. L. Angell, , T. Lea

McB lysates alter gut microbiota to a lean-like state, increase FoxP3+RORγt+IL-17+ Tregs, and improve metabolic health in mice.

bioRxiv · Nov 26, 2019Immunology

Ultra-high throughput multiplexing and sequencing of >500 bp amplicon regions on the Illumina HiSeq 2500 platform

J. B. Holm, M. Humphrys, C. K. Robinson, M. L. Settles, S. Ott, L. Fu, H. Yang, P. Gajer, X. He, E. J. McComb, P. Gravitt, K. G. Ghanem, R. M. Brotman, J. Ravel

The paper describes modifications to the Illumina HiSeq 2500 platform for higher throughput amplicon sequencing with improved quality and multiplexing capabilities.

bioRxiv · Jan 15, 2019Microbiology

Effect of feeding and thermal stress on photosynthesis, respiration and the carbon budget of the scleractinian coral Pocillopora damicornis

N. Lyndby, J. B. Holm, D. Wangpraseurt, R. Grover, C. Rottier, M. Kühl, C. Ferrier-Pages

This study examines how feeding and thermal stress affect oxygen exchange and carbon budgets in the coral Pocillopora damicornis, finding that feeding enhances photosynthesis but thermal stress reduces it, with significant carbon loss observed.

bioRxiv · Jul 26, 2018Ecology

Bio-optical properties and radiative energy budgets in fed and starved scleractinian corals (Pocillopora damicornis) during thermal bleaching

N. H. Lyndby, J. B. Holm, D. Wangpraseurt, C. Ferrier-Pages, M. Kühl

This study examines how feeding affects the photosynthetic efficiency and thermal resilience of corals under stress, finding that fed corals maintain higher efficiency and resilience than unfed ones.

bioRxiv · Jul 26, 2018Biophysics

Microscale light management and inherent optical properties of intact corals studied with optical coherence tomography

D. Wangpraseurt, S. L. Jacques, N. Lyndby, J. B. Holm, C. Ferrier Pages, M. Kuhl

This study measures light scattering properties of coral tissues and skeletons using OCT, revealing species-specific variations in scattering coefficients and anisotropy.

bioRxiv · Jul 25, 2018Biophysics