Author

J. Chiquet

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 3 Microbiology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Assay:metagenomics· 3 Research Focus:cell type annotation· 2 Organism:Arabidopsis· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

S. Robin· 4 shared M. Mariadassou· 2 shared A. Calonnec· 1 shared A. Cougoul· 1 shared A. Estrada Pena· 1 shared A. Hafsi· 1 shared B. Batardiere· 1 shared B. Facon· 1 shared

Activity by Year

2020-2023 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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4 shared papersEcology

S. Robin

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Cell specialization and coordination in Arabidopsis leaves upon pathogenic attack revealed by scRNA-seq.

E. Delannoy, B. Batardiere, S. Pateyron, L. Soubigou-Taconnat, J. Chiquet, J. Colcombet, J. Lang

The paper uses scRNA-seq to identify cell-type-specific defense responses in Arabidopsis leaves infected with Pseudomonas syringae, revealing coordinated and divergent transcriptional programs.

bioRxiv · Mar 2, 2023 · PreprintPlant Biology

Joint species distributions reveal the combined effects of host plants, abiotic factors and species competition as drivers of species abundances in fruit flies

B. Facon, A. Hafsi, M. Charlery, S. Robin, F. Massol, M. Dubart, J. Chiquet, E. Frago, F. Chiroleu, P.-F. Duyck, V. Ravigne

The paper uses joint species distribution modeling and network inference to show host plants are the main driver of fruit fly abundances, followed by climate factors and competition.

bioRxiv · Dec 7, 2020Ecology

The Poisson-lognormal model as a versatile framework for the joint analysis of species abundances

J. Chiquet, M. Mariadassou, S. Robin

This paper introduces the Poisson-lognormal model for joint species abundance analysis, demonstrating its versatility in ecological studies through various applications.

bioRxiv · Oct 7, 2020Ecology

Temporal patterns in Ixodes ricinus microbial communities: an insight into tick-borne microbe interactions

E. LEJAL, J. Chiquet, J. Aubert, S. Robin, A. Estrada Pena, O. Rue, C. Midoux, M. Mariadassou, X. Bailly, A. Cougoul, P. Gasqui, J.-F. Cosson, K. Chalvet-Montfray, M. Vayssier-Taussat, T. Pollet

The paper analyzes temporal dynamics of microbial communities in Ixodes ricinus ticks using high-throughput sequencing and identifies interactions between symbionts and pathogens.

bioRxiv · Sep 26, 2020Microbiology

Microbial association networks give relevant insights into plant pathobiomes

C. Pauvert, T. Fort, A. Calonnec, J. Faivre d'Arcier, E. Chancerel, M. Massot, J. Chiquet, S. Robin, D. A. Bohan, J. Vallance, C. Vacher

The paper uses microbial association networks to explore plant pathobiomes, finding that some inferred associations correspond to ecological interactions confirmed by co-culture experiments.

bioRxiv · Feb 21, 2020 · PreprintEcology