Author

J.-F. Cosson

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Ecology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

C. Midoux· 2 shared E. LEJAL· 2 shared M. Mariadassou· 2 shared M. Vayssier-Taussat· 2 shared O. Rue· 2 shared P. Gasqui· 2 shared T. Pollet· 2 shared A. Cougoul· 1 shared

Activity by Year

2019-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

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2 shared papersMicrobiology

C. Midoux

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Temporal patterns in Ixodes ricinus microbial communities: an insight into tick-borne microbe interactions

E. LEJAL, J. Chiquet, J. Aubert, S. Robin, A. Estrada Pena, O. Rue, C. Midoux, M. Mariadassou, X. Bailly, A. Cougoul, P. Gasqui, J.-F. Cosson, K. Chalvet-Montfray, M. Vayssier-Taussat, T. Pollet

The paper analyzes temporal dynamics of microbial communities in Ixodes ricinus ticks using high-throughput sequencing and identifies interactions between symbionts and pathogens.

bioRxiv · Sep 26, 2020Microbiology

Pathogen community composition and co-infection patterns in a wild community of rodents

J. L. Abbate, M. Galan, M. Razzauti, T. Sironen, L. Voutilainen, H. Henttonen, P. Gasqui, J.-F. Cosson, N. Charbonnel

The paper examines pathogen diversity and co-infection patterns in wild rodent populations, finding host species as the main driver of pathogen community structure and host-specific pathogen associations.

bioRxiv · Feb 9, 2020Ecology

Taxon appearance from extraction and amplification steps demonstrates the value of multiple controls in tick microbiome analysis

E. Lejal, A. Estrada-Pena, M. Marsot, J.-F. Cosson, O. Rue, M. Mariadassou, C. Midoux, M. Vayssier-Taussat, T. Pollet

This study shows that contamination from DNA extraction and amplification steps can represent over half of the sequences in tick microbiome analyses, leading to unreliable results.

bioRxiv · Oct 15, 2019Microbiology