Author

M. Mariadassou

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4 Ecology· 2 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 5 Assay:metagenomics· 4 Research Focus:cell type annotation· 2 Research Focus:clustering· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Approach:Bayesian inference· 1 Research Focus:benchmarking· 1

Frequent Co-Authors

S. Robin· 3 shared C. Midoux· 2 shared E. LEJAL· 2 shared J. Chiquet· 2 shared J.-F. Cosson· 2 shared M. Vayssier-Taussat· 2 shared O. Rue· 2 shared T. Pollet· 2 shared

Activity by Year

2017-2022 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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Curved chords = mutual co-authorship

3 shared papersEcology

S. Robin

Mutual co-authors in cluster

Author profile →

7 papers

Recent·Most cited

Viral DNA SIP: the isotopic composition of virions is correlated with that of the substrate used for host growth

V. Q. H. Ngo, M. Sotomski, A. Guenne, M. Mariadassou, M. Krupovic, F. Enault, A. Bize

The paper tests DNA Stable Isotope Probing on bacteriophage T4 and Escherichia coli, showing a correlation between substrate isotopic composition and virion isotopic signature.

bioRxiv · Oct 15, 2022Microbiology

Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems

D. J. Richter, R. Watteaux, T. Vannier, J. Leconte, P. Fremont, G. Reygondeau, N. Maillet, N. Henry, G. Benoit, O. Da Silva, T. O. Delmont, A. Fernandez-Guerra, S. Suweis, R. Narci, C. Berney, , P. Peterlongo

The paper analyzes plankton genomic distribution across oceans to show how large-scale currents shape biogeography, revealing size-dependent patterns and basin-scale transport effects.

bioRxiv · Dec 24, 2020Ecology

The Poisson-lognormal model as a versatile framework for the joint analysis of species abundances

J. Chiquet, M. Mariadassou, S. Robin

This paper introduces the Poisson-lognormal model for joint species abundance analysis, demonstrating its versatility in ecological studies through various applications.

bioRxiv · Oct 7, 2020Ecology

Temporal patterns in Ixodes ricinus microbial communities: an insight into tick-borne microbe interactions

E. LEJAL, J. Chiquet, J. Aubert, S. Robin, A. Estrada Pena, O. Rue, C. Midoux, M. Mariadassou, X. Bailly, A. Cougoul, P. Gasqui, J.-F. Cosson, K. Chalvet-Montfray, M. Vayssier-Taussat, T. Pollet

The paper analyzes temporal dynamics of microbial communities in Ixodes ricinus ticks using high-throughput sequencing and identifies interactions between symbionts and pathogens.

bioRxiv · Sep 26, 2020Microbiology

Incorporating phylogenetic information in microbiome abundance studies has no effect on detection power and FDR control

A. Bichat, C. Ambroise, J. Plassais, M. Mariadassou

This paper shows that incorporating phylogenetic or correlation-based trees in microbiome differential abundance analysis does not improve detection power or FDR control compared to the classical Benjamini-Hochberg procedure.

bioRxiv · Jan 31, 2020Microbiology

Taxon appearance from extraction and amplification steps demonstrates the value of multiple controls in tick microbiome analysis

E. Lejal, A. Estrada-Pena, M. Marsot, J.-F. Cosson, O. Rue, M. Mariadassou, C. Midoux, M. Vayssier-Taussat, T. Pollet

This study shows that contamination from DNA extraction and amplification steps can represent over half of the sequences in tick microbiome analyses, leading to unreliable results.

bioRxiv · Oct 15, 2019Microbiology

Inference of Adaptive Shifts for Multivariate Correlated Traits

P. Bastide, C. Ane, S. Robin, M. Mariadassou

This paper introduces a method to detect adaptive shifts in multivariate correlated traits across phylogenetic trees, showing improved performance over existing methods.

bioRxiv · Jun 5, 2017Evolutionary Biology