Author

J. E. Coate

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 3

Signature Assays, Organisms & Methods

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Organism:Arabidopsis· 3 Approach:experimental assay· 3 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Research Focus:host-pathogen & immune response· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

J. J. Doyle· 2 shared M. J. Song· 2 shared A. D. Farmer· 1 shared B. I. Potter· 1 shared B. Koskella· 1 shared C. J. Rothfels· 1 shared E. C. Mehlferber· 1 shared J. Jaenisch· 1 shared

Activity by Year

2019-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersPlant Biology

J. J. Doyle

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3 papers

Recent·Most cited

Induction of autotetraploidy and microbiome associations mediate differential responses to pathogens

E. C. Mehlferber, M. J. Song, J. N. Pelaez, J. Jaenisch, J. E. Coate, B. Koskella, C. J. Rothfels

The paper investigates how autotetraploidy in Arabidopsis affects microbiome interactions and pathogen resistance, finding polyploids are more resistant but less reliant on beneficial bacteria.

bioRxiv · Oct 1, 2021 · PreprintPlant Biology

Expression partitioning of duplicate genes at single cell resolution in Arabidopsis roots

J. E. Coate, A. D. Farmer, J. Schiefelbein, J. J. Doyle

The paper analyzes expression patterns of duplicate genes in Arabidopsis roots at single-cell resolution, identifying subfunctionalization and shifts in expression across cell types and states.

bioRxiv · Aug 20, 2020Plant Biology

Gene balance predicts transcriptional responses immediately following ploidy change in Arabidopsis thaliana

B. I. Potter, M. J. Song, J. J. Doyle, J. E. Coate

The paper quantifies gene dosage responses in Arabidopsis thaliana after ploidy change, showing variable expression responses and coordinated changes in dosage-sensitive gene groups.

bioRxiv · Oct 7, 2019Plant Biology