Author

J. F. Gogarten

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 2 Microbiology· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:clustering· 2 Organism:human· 2 Assay:metagenomics· 2 Research Focus:phylogenetics / evolution· 2 Assay:whole-genome sequencing· 2 Research Focus:cell type annotation· 1 Organism:chicken / avian· 1

Frequent Co-Authors

F. H. Leendertz· 4 shared S. Calvignac-Spencer· 3 shared A. Duex· 2 shared A. Franke· 2 shared B. Prepoint· 2 shared B. Vrancken· 2 shared C. Akoua-Koffi· 2 shared C. Bang· 2 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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4 shared papersEvolutionary Biology

F. H. Leendertz

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Author profile →

4 papers

Recent·Most cited

Functional host-specific adaptation of the intestinal microbiome in hominids

M. C. Rühlemann, C. Bang, J. F. Gogarten, B. M. Hermes, M. Groussin, S. M. Waschina, M. Poyet, M. Ulrich, C. Akoua-Koffi, T. Deschner, J.-J. Muyembe-Tamfum, M. M. Robbins, M. Surbeck, R. Wittig, K. Zuberbühler, , A. Franke

The paper analyzes gut microbiome composition and function across hominids to identify host-specific adaptations and evolutionary changes.

bioRxiv · Mar 1, 2023Evolutionary Biology

Archival influenza virus genomes from Europe reveal genomic and phenotypic variability during the 1918 pandemic

L. V. Patrono, B. Vrancken, M. Budt, A. Duex, S. Lequime, S. Boral, M. T. P. Gilbert, J. F. Gogarten, L. Hoffmann, D. Horst, K. Merkel, D. Morens, B. Prepoint, J. Schlotterbeck, V. Schuenemann, , S. Calvignac-Spencer

bioRxiv · May 14, 2021Microbiology

Primate phageomes are structured by superhost phylogeny and environment

J. F. Gogarten, M. Rühlemann, E. Archie, J. Tung, C. Akoua-Koffi, C. Bang, T. Deschner, J.-J. Muyembe-Tamfum, M. M. Robbins, G. Schubert, M. Surbeck, R. M. Wittig, K. Zuberbühler, J. F. Baines, A. Franke, , S. Calvignac-Spencer

The study examines primate phageomes across 23 wild non-human primate taxa, revealing phylosymbiotic patterns and social transmission of phages.

Proceedings of the National Academy of Sciences · Apr 5, 2021Peer-reviewedMicrobiology

The history of measles: from a 1912 genome to an antique origin

A. Duex, S. Lequime, L. V. Patrono, B. Vrancken, S. Boral, J. F. Gogarten, A. Hilbig, D. Horst, K. Merkel, B. Prepoint, S. Santibanez, J. Schlotterbeck, M. A. Suchard, M. Ulrich, N. Widulin, , S. Calvignac-Spencer

The paper sequences a 1912 measles virus genome and uses molecular clock modeling to estimate measles virus divergence from rinderpest virus as early as the 4th century BCE.

bioRxiv · Dec 29, 2019 · PreprintEvolutionary Biology