Author

J. Fuhrman

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5

Signature Assays, Organisms & Methods

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Assay:metagenomics· 5 Approach:statistical model· 3 Research Focus:benchmarking· 2 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:multiple species· 1

Frequent Co-Authors

Y.-C. Yeh· 2 shared A. M. Long· 1 shared C. Fletcher-Hoppe· 1 shared D. Needham· 1 shared E. Sieradzki· 1 shared E. T. Sieradzki· 1 shared J. C. Ignacio-Espinoza· 1 shared J. L. Weissman· 1 shared

Activity by Year

2017-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 8 mutual co-author links

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2 shared papersMicrobiology

Y.-C. Yeh

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5 papers

Recent·Most cited

Symbiotic diazotrophic UCYN-A strains co-occurred with El Niño, relaxed upwelling, and varied eukaryotes over 10 years off Southern California Bight

C. Fletcher-Hoppe, Y.-C. Yeh, Y. Raut, J. L. Weissman, J. Fuhrman

The paper examines UCYN-A symbioses over 10 years, finding increased UCYN-A1 abundance post-El Niño and associations with dinoflagellates and varying hosts.

bioRxiv · Nov 7, 2022 · PreprintMicrobiology

Metagenomics and quantitative stable isotope probing offer insights into metabolism of polycyclic aromatic hydrocarbons degraders in chronically polluted seawater

E. T. Sieradzki, M. Morando, J. Fuhrman

The paper investigates PAH-degrading microbial communities in chronically polluted seawater using metagenomics and stable isotope probing to identify metabolic pathways and propose bioremediation strategies.

bioRxiv · Oct 16, 2020Microbiology

Benchmarking metagenomic marine microbial growth prediction from codon usage bias and peak-to-trough ratios

A. M. Long, S. Hou, J. C. Ignacio-Espinoza, J. Fuhrman

This study benchmarks methods for predicting marine microbial growth rates using codon usage bias and peak-to-trough ratios from metagenomic data.

bioRxiv · Sep 30, 2019Microbiology

Mosaic patterns of B-vitamin synthesis and utilization in a natural marine microbial community

L. Gomez-Consarnau, R. Sachdeva, S. M. Gifford, L. S. Cutter, J. Fuhrman, S. A. Sanudo-Wilhelmy, M. A. Moran

The paper analyzes metatranscriptomes of a coastal microbial community to identify B-vitamin synthesizers and consumers, finding mosaic patterns of synthesis and utilization.

bioRxiv · Mar 14, 2018Microbiology

Taxon disappearance from microbiome analysis indicates need for mock communities as a standard in every sequencing run

Y.-C. Yeh, D. Needham, E. Sieradzki, J. Fuhrman

The paper demonstrates that routine use of mock communities in microbiome sequencing detects hidden biases and aberrations that could otherwise go undetected, highlighting their necessity as a standard in every sequencing run.

bioRxiv · Oct 19, 2017Microbiology