Author

J. H. Wisecaver

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Evolutionary Biology· 2 Plant Biology· 2 Microbiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 3 Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Approach:experimental assay· 2 Organism:plant (other)· 2 Organism:Arabidopsis· 1 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

A. Rokas· 2 shared R. P. Auber· 2 shared A. D. Gloss· 1 shared A. L. Pendleton· 1 shared A. Lind· 1 shared A. R. Menon· 1 shared A. T. Borowsky· 1 shared B. S. Moore· 1 shared

Activity by Year

2016-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 9 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersMicrobiology

A. Rokas

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Extreme genome diversity and cryptic speciation in a harmful algal bloom forming eukaryote

J. H. Wisecaver, R. P. Auber, A. L. Pendleton, N. F. Watervoort, T. R. Fallon, O. L. Riedling, S. R. Manning, B. S. Moore, W. W. Driscoll

This study presents genome assemblies of fifteen Prymnesium parvum strains, revealing extreme genome diversity, cryptic speciation, and hybridization, with implications for understanding harmful algal blooms.

bioRxiv · Oct 25, 2022Evolutionary Biology

Beyond the biosynthetic gene cluster paradigm: Genome-wide co-expression networks connect clustered and unclustered transcription factors to secondary metabolic pathways

M. J. Kwon, C. Steiniger, T. C. Cairns, J. H. Wisecaver, A. Lind, C. Pohl, C. Regner, A. Rokas, V. Meyer

This study identifies six transcription factors regulating secondary metabolism in Aspergillus niger by analyzing co-expression networks across 155 growth conditions.

Microbiology Spectrum · Oct 31, 2021Peer-reviewedMicrobiology

Integrative analysis of the shikonin metabolic network identifies new gene connections and reveals evolutionary insight into shikonin biosynthesis

T. Suttiyut, R. P. Auber, M. Ghaste, C. N. Kane, S. A. McAdam, J. H. Wisecaver, J. R. Widhalm

The paper identifies new gene connections in shikonin biosynthesis and reveals evolutionary links between shikonin and ubiquinone pathways using coexpression network analysis.

bioRxiv · Jun 30, 2021Plant Biology

Horizontal transfer of prokaryotic cytolethal distending toxin B genes to eukaryotes

K. I. Verster, J. H. Wisecaver, R. P. Duncan, M. Karageorgi, A. D. Gloss, E. Armstrong, D. K. Price, A. R. Menon, Z. M. Ali, N. K. Whiteman

The paper reports the horizontal transfer of the cdtB gene, encoding a DNase, from bacteriophages to eukaryotic insect genomes, where it retains DNase activity and may serve as a defensive mechanism against parasitoid wasps.

bioRxiv · Feb 9, 2019Evolutionary Biology

A global co-expression network approach for connecting genes to specialized metabolic pathways in plants

J. H. Wisecaver, A. T. Borowsky, V. Tzin, G. Jander, D. Kliebenstein, A. Rokas

The paper uses global co-expression networks to identify modules of genes associated with specialized metabolic pathways in plants, finding that these modules contain known biosynthetic genes and validated pathways.

bioRxiv · Dec 14, 2016Plant Biology