Author

J. J. Hamilton

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4

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Assay:metagenomics· 4 Approach:statistical model· 4 Research Focus:cell type annotation· 2 Research Focus:gene regulatory network inference· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:ecology & biodiversity· 1 Approach:experimental assay· 1

Frequent Co-Authors

B. O. Oyserman· 2 shared F. Moya-Flores· 2 shared K. T. Forest· 2 shared S. L. Garcia· 2 shared A. Eiler· 1 shared B. S. Brown· 1 shared C. Wurzbacher· 1 shared D. Amador-Noguez· 1 shared

Activity by Year

2017-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersMicrobiology

B. O. Oyserman

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4 papers

Recent·Most cited

Diagnosing and predicting mixed culture fermentations with unicellular and guild-based metabolic models

M. J. Scarborough, J. J. Hamilton, E. A. Erb, T. J. Donohue, D. R. Noguera

The paper constructs two metabolic models to predict and improve medium-chain fatty acid production in microbial communities using genomic, transcriptomic, and metabolomic data.

bioRxiv · Aug 3, 2020Microbiology

acI Actinobacteria Assemble a Functional Actinorhodopsin with Natively-synthesized Retinal

J. R. Dwulit-Smith, J. J. Hamilton, D. M. Stevenson, S. He, B. O. Oyserman, F. Moya-Flores, D. Amador-Noguez, K. McMahon, K. T. Forest

This study demonstrates that acI Actinobacteria can synthesize retinal and assemble functional actinorhodopsins for proton pumping using genomic and heterologous expression analyses.

bioRxiv · Jul 11, 2018Microbiology

Metabolic Network Analysis and Metatranscriptomics Reveals Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage acI

J. J. Hamilton, S. L. Garcia, B. S. Brown, B. O. Oyserman, F. Moya-Flores, S. Bertilsson, R. R. Malmstrom, K. T. Forest, K. D. McMahon

bioRxiv · Jul 21, 2017Microbiology

Model communities hint to promiscuous metabolic linkages between ubiquitous free-living freshwater bacteria

S. L. Garcia, M. Buck, J. J. Hamilton, C. Wurzbacher, M. A. Alm Rosenblad, K. D. D. McMahon, H.-P. Grossart, F. Warnecke, A. Eiler

The paper investigates metabolic interactions among free-living freshwater bacteria and finds they form loose, unspecific cooperative networks rather than specific dependencies.

bioRxiv · Jan 28, 2017Microbiology