Author

T. J. Donohue

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 3 Approach:experimental assay· 3 Research Focus:metabolism & bioenergetics· 2 Assay:metabolomics· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

D. R. Noguera· 5 shared K. Myers· 2 shared M. J. Scarborough· 2 shared Y. Ma· 2 shared A. B. Banta· 1 shared A. N. Hall· 1 shared A. V. Niles· 1 shared B. T. Burger· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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5 shared papersMicrobiology

D. R. Noguera

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Author profile →

5 papers

Recent·Most cited

Tools for Genetic Engineering and Gene Expression Control in Novosphingobium aromaticivorans and Rhodobacter sphaeroides

A. N. Hall, B. W. Hall, K. J. Kinney, G. G. Olsen, A. B. Banta, D. R. Noguera, T. J. Donohue, J. M. Peters

This paper develops genetic tools for Novosphingobium aromaticivorans and Rhodobacter sphaeroides to enable efficient gene insertion and expression control using Tn7 transposition and synthetic promoters.

bioRxiv · Aug 25, 2023 · PreprintMicrobiology

Functional pathway redundancy in the metabolism of plant-derived phenolics by Novosphingobium aromaticivorans

J. M. Perez, W. S. Kontur, C. Gehl, D. M. Gille, Y. Ma, A. V. Niles, G. Umana, T. J. Donohue, D. R. Noguera

This study identifies a new metabolic pathway in Novosphingobium aromaticivorans for converting phenolic compounds into 2-pyrone-4,6-dicarboxylic acid, improving strain engineering for lignin valorization.

bioRxiv · Nov 13, 2020 · PreprintMicrobiology

Diagnosing and predicting mixed culture fermentations with unicellular and guild-based metabolic models

M. J. Scarborough, J. J. Hamilton, E. A. Erb, T. J. Donohue, D. R. Noguera

The paper constructs two metabolic models to predict and improve medium-chain fatty acid production in microbial communities using genomic, transcriptomic, and metabolomic data.

bioRxiv · Aug 3, 2020Microbiology

Anaerobic degradation of syringic acid by an adapted strain of Rhodopseudomonas palustris

J. Z. Oshlag, Y. Ma, K. Morse, B. T. Burger, R. A. Lemke, S. D. Karlen, K. Myers, T. J. Donohue, D. R. Noguera

This paper isolates and characterizes a Rhodopseudomonas palustris strain capable of anaerobically degrading syringic acid, revealing a novel metabolic pathway distinct from the benzoyl-CoA degradation pathway.

bioRxiv · Aug 20, 2019Microbiology

Multi-omic analysis of medium-chain fatty acid synthesis by Candidatus Weimerbacter bifidus, gen. nov., sp. nov., and Candidatus Pseudoramibacter fermentans, sp. nov.

M. J. Scarborough, K. Myers, T. J. Donohue, D. R. Noguera

The paper characterizes two MCFA-producing bacteria using multi-omic analysis of an anaerobic microbiome involved in chain elongation from organic waste.

bioRxiv · Aug 7, 2019Microbiology