Author

J. J. Hanly

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Evolutionary Biology· 7

Signature Assays, Organisms & Methods

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Organism:multiple species· 5 Research Focus:cell type annotation· 4 Approach:experimental assay· 3 Approach:genetic perturbation / CRISPR· 3 Organism:bacteria (other)· 2 Research Focus:chromatin & epigenetic regulation· 2 Research Focus:development & morphogenesis· 2 Research Focus:gene regulatory network inference· 2

Frequent Co-Authors

A. Martin· 5 shared C. D. Jiggins· 5 shared L. S. Loh· 3 shared R. Papa· 3 shared W. O. McMillan· 3 shared A. H. Porter· 2 shared A. Mazo-Vargas· 2 shared A. Ren· 2 shared

Activity by Year

2018-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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5 shared papersEvolutionary Biology

A. Martin

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7 papers

Recent·Most cited

A long non-coding RNA at the cortex locus controls adaptive colouration in butterflies

L. Livraghi, J. J. Hanly, E. Evans, C. J. Wright, L. S. Loh, A. Mazo-Vargas, K. Kamrava, A. T. Carter, E. S. van der Heijden, R. D. Reed, R. Papa, C. D. Jiggins, A. Martin

This study identifies a long non-coding RNA, ivory, at the cortex locus that controls adaptive colouration in butterflies by modulating pigmentation patterns through CRISPR mutagenesis.

bioRxiv · Feb 9, 2024 · PreprintEvolutionary Biology

Evolutionary dynamics of genome size and content during the adaptive radiation of Heliconiini butterflies

F. Cicconardi, E. Milanetti, E. C. Pinheiro de Castro, A. Mazo-Vargas, S. M. Belleghem, A. A. Ruggieri, P. Rastas, J. J. Hanly, E. Evans, C. D. Jiggins, W. O. McMillan, R. Papa, D. di Marino, A. Martin, S. H. Montgomery

This study generates and analyzes 63 Heliconiini butterfly genomes to explore evolutionary patterns and genomic basis of traits during adaptive radiation.

bioRxiv · Aug 12, 2022Evolutionary Biology

A genetic switch for male UV-iridescence in an incipient species pair of sulphur butterflies

V. Ficarrotta, J. J. Hanly, L. S. Loh, C. M. Francescutti, A. Ren, K. Tunström, C. W. Wheat, A. H. Porter, B. A. Counterman, A. Martin

This study identifies a genetic switch on the Z chromosome that controls male UV-iridescence in two incipient butterfly species, contributing to reproductive isolation.

bioRxiv · May 21, 2021Evolutionary Biology

A complex interplay between balancing selection and introgression maintains a genus-wide alternative life-history strategy.

k. tunström, A. Woronik, J. J. Hanly, P. Rastas, A. Chichvarkhin, A. D. Warren, A. Kawahara, S. D. Schoville, V. Ficarrotta, A. H. Porter, W. B. Watt, A. Martin, C. W. Wheat

The paper identifies the genetic basis of an alternative life-history strategy in butterflies and shows it originated once, maintained by balancing selection and introgression across species.

bioRxiv · May 20, 2021Evolutionary Biology

Cortex cis-regulatory switches establish scale colour identity and pattern diversity in Heliconius

L. Livraghi, J. J. Hanly, S. M. Van Belleghem, G. Montejo-Kovacevich, E. S. M. van der Heijden, L. S. Loh, A. Ren, I. A. Warren, J. J. Lewis, C. Concha, L. H. Lopez, C. Wright, J. M. Walker, Z. H. Goldberg, J. Foley, , C. D. Jiggins

The paper identifies cis-regulatory regions controlled by cortex that determine scale color identity and pattern diversity in Heliconius butterflies through CRISPR perturbations and chromatin accessibility analysis.

bioRxiv · May 26, 2020 · PreprintEvolutionary Biology

Conservation and flexibility in the gene regulatory landscape of Heliconiine butterfly wings

J. J. Hanly, R. W. Wallbank, W. O. McMillan, C. D. Jiggins

The paper investigates gene regulatory landscapes in Heliconius butterfly wings, identifying conserved and variable factors regulating wing pattern genes.

bioRxiv · Feb 5, 2019Evolutionary Biology

Sexually dimorphic gene expression and transcriptome evolution provides mixed evidence for a fast-Z effect in Heliconius

A. Pinharanda, M. Rousselle, S. H. Martin, J. J. Hanly, J. W. Davey, S. Kumar, N. Galtier, C. D. Jiggins

The paper examines gene expression and molecular evolution in the Z sex chromosome of Heliconius butterflies, finding mixed evidence for a fast-Z effect.

bioRxiv · Jul 31, 2018Evolutionary Biology