Author

J. K. Yamashita

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 2 Pharmacology & Toxicology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:human· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Approach:deep learning· 1

Frequent Co-Authors

J. Yamane· 2 shared W. Fujibuchi· 2 shared A. Hotta· 1 shared H. Kouzuki· 1 shared H. Otsuki· 1 shared H. Sone· 1 shared H. Xu· 1 shared K. Inomata· 1 shared

Activity by Year

2021-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersCell Biology

J. Yamane

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3 papers

Recent·Most cited

Cell BiologybioRxivMar 31, 2022

AMPK-p38 axis converts human pluripotent stem cells to naïve state

Y. Zhennan, Y. Liu, H. Xu…·J. K. Yamashita

This paper identifies the AMPK-p38 signaling axis as a pathway to convert primed human pluripotent stem cells to the naive state using AICAR or CA-p38.

DOI 10.1016/j.isci.2026.115569

humanbulk RNA-seq

𝕏 PostBluesky

Pharmacology & ToxicologybioRxivPreprintNov 5, 2021

Prediction of broad chemical toxicities using induced pluripotent stem cells and gene networks by transfer learning from embryonic stem cell data

J. Yamane, T. Wada, H. Otsuki…·W. Fujibuchi

This paper predicts chemical toxicities using induced pluripotent stem cells and gene networks via transfer learning from embryonic stem cell data, achieving high accuracy across multiple toxicity categories.

DOI 10.1101/2021.11.05.466718

humanbulk RNA-seq

𝕏 PostBluesky

Cell BiologybioRxivMar 30, 2021

Extracellular vesicles synchronize cellular phenotypes of differentiating cells

T. Minakawa, T. Matoba, J. K. Yamashita

The paper shows extracellular vesicles mediate phenotypic synchronization during cell differentiation, specifically through miR-132-containing vesicles enhancing mesoderm and cardiomyocyte differentiation.

DOI 10.1002/jev2.12147

mousebulk RNA-seq

𝕏 PostBluesky