Author

J. M. Pedraza

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Systems Biology· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Organism:E. coli· 1 Research Focus:gene regulatory network inference· 1 Approach:genetic perturbation / CRISPR· 1

Frequent Co-Authors

A. Singh· 1 shared C. A. Nieto Acuna· 1 shared C. A. Vargas-Garcia· 1 shared C. Herrfurth· 1 shared C. Leidy· 1 shared C. Nieto· 1 shared C. Vargas-Garcia· 1 shared D. M. Riano-Pachon· 1 shared

Activity by Year

2020-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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1 shared paperSystems Biology

A. Singh

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Author profile →

3 papers

Recent·Most cited

Modeling cell size regulation under complex and dynamic environments

C. A. Nieto Acuna, C. A. Vargas-Garcia, A. Singh, J. M. Pedraza

The paper models cell size regulation as a stochastic process under dynamic environments and predicts how cell size and division strategy change with nutrient depletion.

bioRxiv · Sep 9, 2022 · PreprintSystems Biology

Continuous Rate Modelling of bacterial stochastic size dynamics

C. Nieto, C. Vargas-Garcia, J. M. Pedraza

The paper develops a theoretical framework to model stochastic bacterial size dynamics and identifies noise sources affecting size distribution oscillations.

bioRxiv · Sep 29, 2020 · PreprintSystems Biology

An integrative multi-omics approach points to membrane composition as a key factor in E. coli persistence

S. J. Canas-Duarte, L. Sun, M. I. Perez-Lopez, C. Herrfurth, L. M. Contreras, I. Feussner, C. Leidy, J. Paulsson, D. M. Riano-Pachon, J. M. Pedraza, S. Restrepo

This study identifies membrane composition changes as a key factor in E. coli persistence using genomic, transcriptomic, and lipidomic analyses of a high-persistence mutant.

bioRxiv · Aug 28, 2020Microbiology