Author

J. S. Favate

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Evolutionary Biology· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:E. coli· 2 Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:gene regulatory network inference· 1 Assay:metabolomics· 1 Approach:statistical model· 1 Research Focus:transcription & RNA processing· 1

Frequent Co-Authors

P. Shah· 2 shared S. S. Yadavalli· 2 shared E. Chiles· 1 shared K. S. Skalenko· 1 shared S. Liang· 1 shared X. Su· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 12 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersEvolutionary Biology

P. Shah

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Linking genotypic and phenotypic changes in the E. coli Long-Term Evolution Experimentusing metabolomics

J. S. Favate, K. S. Skalenko, E. Chiles, X. Su, S. S. Yadavalli, P. Shah

The paper links mutations to metabolic changes and fitness in E. coli from the LTEE using metabolomics and integrates this with mutation and expression data.

bioRxiv · Feb 15, 2023 · PreprintEvolutionary Biology

The landscape of transcriptional and translational changes over 22 years of bacterial adaptation

J. S. Favate, S. Liang, S. S. Yadavalli, P. Shah

This study examines transcriptional and translational changes in E. coli over 22 years of adaptation, finding that mRNA abundance increases with cell size and that gene expression patterns are similar across replicate populations despite few shared mutations.

bioRxiv · Jan 12, 2021Evolutionary Biology