Author

J. Sese

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 3 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Approach:experimental assay· 3 Organism:Arabidopsis· 2 Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Organism:plant (other)· 2 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

K. K. Shimizu· 4 shared R. Shimizu-Inatsugi· 4 shared J. Sun· 3 shared A. Hay· 2 shared H. E. L. Lischer· 2 shared H. Kudoh· 2 shared M. Hatakeyama· 2 shared R. Akiyama· 2 shared

Activity by Year

2018-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

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4 shared papersPlant Biology

K. K. Shimizu

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4 papers

Recent·Most cited

PlantServation: time-series phenotyping using machine learning revealed seasonal pigment fluctuation in diploid and polyploid Arabidopsis

R. Akiyama, T. Goto, T. Tameshige, J. Sugisaka, K. Kuroki, J. Sun, J. Akita, M. Hatakeyama, H. Kudoh, T. Kenta, A. Tonouchi, Y. Shimahara, J. Sese, N. Kutsuna, R. Shimizu-Inatsugi, K. K. Shimizu

PlantServation uses machine learning to analyze field images and estimate anthocyanin content in Arabidopsis, revealing seasonal fluctuations influenced by environmental factors.

bioRxiv · Nov 21, 2022 · PreprintPlant Biology

Fine-scale ecological and transcriptomic data reveal niche differentiation of an allopolyploid from diploid parents in Cardamine

R. Akiyama, J. Sun, M. Hatakeyama, H. E. L. Lischer, R. V. Briskine, A. Hay, X. Gan, M. Tsiantis, H. Kudoh, M. M. Kanaoka, J. Sese, K. K. Shimizu, R. Shimizu-Inatsugi

This study examines the ecological and transcriptomic differences between an allopolyploid plant and its diploid parents, finding niche differentiation linked to water availability.

bioRxiv · Jun 24, 2020 · PreprintPlant Biology

A recently formed triploid Cardamine insueta inherits leaf vivipary and submergence tolerance traits of parents

J. Sun, R. Shimizu-Inatsugi, H. Hofhuis, K. Shimizu, A. Hay, K. K. Shimizu, J. Sese

This study characterizes the transcriptomic response of a recently formed triploid plant species to submergence, revealing inherited traits from its parental species.

bioRxiv · Jun 3, 2020Plant Biology

Patterns of polymorphism, selection and linkage disequilibrium in the subgenomes of the allopolyploid Arabidopsis kamchatica

T. Paape, R. V. Briskine, H. E. L. Lischer, G. Halstead-Nussloch, R. Shimizu-Inatsugi, M. Hatekayama, K. Tanaka, T. Nishiyama, R. Sabirov, J. Sese, K. K. Shimizu

The paper analyzes polymorphism, selection, and linkage disequilibrium in the subgenomes of Arabidopsis kamchatica, finding reduced purifying selection and increased adaptive substitutions compared to parental species.

bioRxiv · Jan 15, 2018Evolutionary Biology