Author

J. v. d. Torre

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 2 Research Focus:chromatin & epigenetic regulation· 1 Approach:experimental assay· 1 Assay:fluorescence / live-cell microscopy· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

C. Dekker· 2 shared B. Pradhan· 1 shared E. Abbondanzieri· 1 shared E. Kim· 1 shared I. F. Davidson· 1 shared J.-M. Peters· 1 shared M. Ganji· 1 shared R. Barth· 1 shared

Activity by Year

2018-2022 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBiophysics

C. Dekker

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Can pseudotopological models for SMC-driven DNA loop extrusion explain the traversal of physical roadblocks bigger than the SMC ring size?

B. Pradhan, R. Barth, E. Kim, I. F. Davidson, J. v. d. Torre, J.-M. Peters, C. Dekker

This study evaluates pseudotopological models of SMC-driven DNA loop extrusion and finds they conflict with experimental data on roadblock traversal.

bioRxiv · Aug 2, 2022 · PreprintBiophysics

DNA sequence encodes the position of DNA supercoils

S. H. Kim, M. Ganji, J. v. d. Torre, E. Abbondanzieri, C. Dekker

The paper shows DNA sequence encodes supercoil positions by pinning plectonemes, with intrinsic curvature over ~70 bp being key, and predicts plectonemes upstream of prokaryotic transcription start sites.

bioRxiv · Mar 1, 2018Biophysics