Author

Jacob Smith

Dalhousie University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Assay:metagenomics· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Adelinde M. UhrmacheriD· 1 shared Afnan FaridouniD· 1 shared Ajay Sran· 1 shared Andrew Gibb· 1 shared Anjali Yadav BhagirathiD· 1 shared Annie Zhang· 1 shared Anum Haider· 1 shared Fiete HaackiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBioinformatics

Adelinde M. UhrmacherORCID

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2 papers

Recent·Most cited

FAVABEAN and FALAPhyl: Open-Source Pipelines for Scalable 16s rRNA Microbiome Data Processing and Visualization

Afnan Faridoun, Ramon Carvalho, Jacob Smith, Andrew Gibb, Lavanya Jain, Annie Zhang, Ajay Sran, Johanna Redmond, Mohammad Zubbair Malik, Monica Prasad Gibson, Anum Haider, Umar Rekhi, Anjali Yadav Bhagirath, Leigha D. Rock, Khaled Altabtbaei

FAVABEAN and FALAPhyl are open-source pipelines for processing and analyzing 16S rRNA microbiome data, validated through three case studies on oral microbiomes.

PLoS ONE · Apr 7, 2026Peer-reviewedBioinformatics

Relating simulation studies by provenance--Developing a family of Wnt signaling models

Kai Budde, Jacob Smith, Pia Wilsdorf, Fiete Haack, Adelinde M. Uhrmacher

The paper develops a provenance ontology for simulation models of Wnt signaling and applies it to 19 models, showing how they are related through shared entities and activities.

PLoS Computational Biology · Aug 5, 2021Peer-reviewedBioinformatics